Publications

Journal articles

Al-Sayegh, R.  and Makatsoris, C.   (2015)   'Vision-Augmented Molecular Dynamics Simulation of Nanoindentation'. JOURNAL OF NANOMATERIALS. doi: 10.1155/2015/857574 Download publication 

Davies, J. , Chen, J. , Pink, R. , Carter, D. , et al.   (2015)   'Orexin receptors exert a neuroprotective effect in Alzheimer's disease (AD) via heterodimerization with GPR103'. Scientific Reports, 5 doi: 10.1038/srep12584 Download publication 

Rinaldi, G. , Yan, H. , Nacif-Pimenta, R. , Matchimakul, P. , et al.   (2015)   'Cytometric analysis, genetic manipulation and antibiotic selection of the snail embryonic cell line Bge from Biomphalaria glabrata, the intermediate host of Schistosoma mansoni.'. International Journal of Parasitology Research, 45 (8).  pp. 527 - 535. Download publication 

Jahangirian, M. , Taylor, SJE. , Eatock, J. , Stergioulas, L.  and Taylor, PM.   (2015)   'Causal study of low stakeholder engagement in healthcare simulation projects'. Journal of the Operational Research Society, 66 (3).  pp. 369 - 379. doi: 10.1177/0037549715583150 

Pârvu, O. , Gilbert, D. , Heiner, M. , Liu, F. , et al.   (2015)   'Spatial-temporal modelling and analysis of bacterial colonies with phase variable genes'. ACM Transactions on Modeling and Computer Simulation, 25 (2).  doi: 10.1145/2742546 

Green, C. , Brian, J. , Kanda, R. , Scholze, M. , et al.   (2015)   'Environmental concentrations of anti-androgenic pharmaceuticals do not impact sexual disruption in fish alone or in combination with steroid oestrogens'. Aquatic Toxicology, 160 pp. 117 - 127. Download publication 

Anjomani Virmouni, S. , Ezzatizadeh, V. , Sandi, C. , Sandi, M. , et al.   (2015)   'A novel GAA-repeat-expansion-based mouse model of Friedreich's ataxia'. Dis Model Mech, 8 (3).  pp. 225 - 235. doi: 10.1242/dmm.018952 Download publication 

Johnson, AC. , Keller, V. , Dumont, E.  and Sumpter, JP.   (2015)   'Assessing the concentrations and risks of toxicity from the antibiotics ciprofloxacin, sulfamethoxazole, trimethoprim and erythromycin in European rivers'. Science of the Total Environment, 511 pp. 747 - 755. doi: 10.1016/j.scitotenv.2014.12.055 

Johnson, AC.  and Sumpter, JP.   (2015)   'Improving the quality of wastewater to tackle trace organic contaminants: Think before you act!'. Environmental Science and Technology, 49 (7).  pp. 3999 - 4000. doi: 10.1021/acs.est.5b00916 

Ågerstrand, M. , Berg, C. , Björlenius, B. , Breitholtz, M. , et al.   (2015)   'Improving environmental risk assessment of human pharmaceuticals'. Environmental Science and Technology, 49 (9).  pp. 5336 - 5345. doi: 10.1021/acs.est.5b00302 

Ogbe, A. , Miao, T. , Symonds, ALJ. , Omodho, B. , et al.   (2015)   'Early Growth Response Genes 2 and 3 Regulate the Expression of Bcl6 and Differentiation of T Follicular Helper Cells'. Journal of Biological Chemistry, In Press doi: 10.1074/jbc.M114.634816 Download publication 

Bourton, EC. , Hussain, H. , Plowman, PN. , Harvey, AJ.  and Parris, C.   (2015)   'Radiosensitivity of Human Breast Cancer Cell Lines Expressing the Breast Tumor Kinase (Brk)'. Journal of Cancer Science and Therapy, 7 (3).  pp. 95 - 101. doi: 10.4172/1948-5956.1000331 Download publication 

Tsimiklis, P. , Ceschin, F. , Green, S. , Qin, SF. , et al.   (2015)   'A Consumer-Centric Open Innovation Framework for Food and Packaging Manufacturing'. International Journal of Knowledge and Systems Science, 6 (3).  pp. 52 - 69. doi: 10.4018/ijkss.2015070104 Download publication 

Ivanova, D. , Taylor, T. , Smith, SL. , Dimude, JU. , et al.   (2015)   'Shaping the landscape of the Escherichia coli chromosome: replication-transcription encounters in cells with an ectopic replication origin'. Nucleic Acids Research. doi: 10.1093/nar/gkv704 Download publication 

Donnachie, RL. , Johnson, AC.  and Sumpter, JP.   (2016)   'A rational approach to selecting and ranking some pharmaceuticals of concern for the aquatic environment and their relative importance compared with other chemicals'. Environmental Toxicology and Chemistry, 35 (4).  pp. 1021 - 1027. doi: 10.1002/etc.3165 

Bergman, Å. , Becher, G. , Blumberg, B. , Bjerregaard, P. , et al.   (2015)   'Manufacturing doubt about endocrine disrupter science - A rebuttal of industry-sponsored critical comments on the UNEP/WHO report "State of the Science of Endocrine Disrupting Chemicals 2012"'. Regulatory Toxicology and Pharmacology. doi: 10.1016/j.yrtph.2015.07.026 Download publication 

Kim, WR. , Aung, MM. , Chang, YS.  and Makatsoris, C.   (2015)   'Freshness Gauge based cold storage management: A method for adjusting temperature and humidity levels for food quality'. Food Control, 47 pp. 510 - 519. doi: 10.1016/j.foodcont.2014.07.051 

Harris, CA.  and Sumpter, JP.   (2015)   'Could the Quality of Published Ecotoxicological Research Be Better?'. Environmental Science and Technology, 49 (16).  pp. 9495 - 9496. doi: 10.1021/acs.est.5b01465 

Liang, J. , Wang, Z. , Liu, Y.  and Liu, X.   (2014)   'State estimation for two-dimensional complex networks with randomly occurring nonlinearities and randomly varying sensor delays'. International Journal of Robust and Nonlinear Control, 24 (1).  pp. 18 - 38. doi: 10.1002/rnc.2869 

Wei, J.  and Winter, M.   (2014)   'Stability of cluster solutions in a cooperative consumer chain model'. Journal of Mathematical Biology, 68 (1-2).  pp. 1 - 39. doi: 10.1007/s00285-012-0616-8 Download publication 

Liang, J. , Wang, Z.  and Liu, X.   (2014)   'Robust state estimation for two-dimensional stochastic time-delay systems with missing measurements and sensor saturation'. Multidimensional Systems and Signal Processing, 25 (1).  pp. 157 - 177. doi: 10.1007/s11045-012-0197-0 

Donnachie, RL. , Johnson, AC. , Moeckel, C. , Pereira, MG.  and Sumpter, JP.   (2014)   'Using risk-ranking of metals to identify which poses the greatest threat to freshwater organisms in the UK'. Environmental Pollution, 194 pp. 17 - 23. doi: 10.1016/j.envpol.2014.07.008 

Bridger, JM. , Arican-Gotkas, HD. , Foster, HA. , Godwin, LS. , et al.   (2014)   'The non-random repositioning of whole chromosomes and individual gene loci in interphase nuclei and its relevance in disease, infection, aging, and cancer'. Advances in Experimental Medicine and Biology, 773 pp. 263 - 279. doi: 10.1007/978-1-4899-8032-8-12 Download publication 

Foster, HA. , Davies, J. , Pink, RC. , Turkcigdem, S. , et al.   (2014)   'The human myometrium differentially expresses mTOR signalling components before and during pregnancy: Evidence for regulation by progesterone'. Journal of Steroid Biochemistry and Molecular Biology, 139 pp. 166 - 172. doi: 10.1016/j.jsbmb.2013.02.017 Download publication 

Al-Mahdawi, S. , Virmouni, SA.  and Pook, MA.   (2014)   'The emerging role of 5-hydroxymethylcytosine in neurodegenerative diseases'. Frontiers in Neuroscience, 8 (DEC).  doi: 10.3389/fnins.2014.00397 Download publication 

Sumpter, JP.   (2014)   'The challenge: Do pharmaceuticals present a risk to the environment, and what needs to be done to answer the question?'. Environmental Toxicology and Chemistry, 33 (9).  pp. 1915 - 1915. doi: 10.1002/etc.2666 

Sumpter, JP. , Donnachie, RL.  and Johnson, AC.   (2014)   'The apparently very variable potency of the anti-depressant fluoxetine'. Aquatic Toxicology. doi: 10.1016/j.aquatox.2013.12.010 

Knight, M. , Arican-Goktas, HD. , Ittiprasert, W. , Odoemelam, EC. , et al.   (2014)   'Schistosomes and snails: A molecular encounter'. Frontiers in Genetics, 5 doi: 10.3389/fgene.2014.00230 Download publication 

Panov, P. , Soldatova, L.  and Džeroski, S.   (2014)   'Ontology of core data mining entities'. Data Mining and Knowledge Discovery, 28 (5-6).  pp. 1222 - 1265. doi: 10.1007/s10618-014-0363-0 Download publication 

Williamson, T. , Du, X. , Bell, B. , Coulson, C. , et al.   (2014)   'Mechatronic feasibility of minimally invasive, atraumatic cochleostomy'. BioMed Research International, 2014 pp. . doi: 10.1155/2014/181624 Download publication 

Gilbert, D.  and Parvu, O.   (2014)   'Implementation of linear minimum area enclosing traingle algorithm'. Computational and Applied Mathematics, Forthcoming Download publication 

Kamel, YM. , Naiel, A. , Alshehri, A. , Saccone, S. , et al.   (2014)   'Fluorescence in situ hybridisation assays designed for del(7q) detection uncover more complex rearrangements in myeloid leukaemia cell lines'. Trends in Cancer Research, 10 pp. 17 - 26. Download publication 

Brett, P. , Du, X. , Zoka-Assadi, M. , Coulson, C. , et al.   (2014)   'Feasibility study of a hand guided robotic drill for cochleostomy'. BioMed Research International, 2014 pp. . doi: 10.1155/2014/656325 Download publication 

Ceccon, S. , Garway-Heath, D. , Crabb, D.  and Tucker, A.   (2014)   'Exploring early glaucoma and the visual field test: Classification and clustering using Bayesian networks'. IEEE Transactions on Biomedical and Health Informatics, Forthcoming doi: 10.1109/JBHI.2013.2289367 

Hussain, HA.  and Harvey, A.   (2014)   'Evolution of breast cancer therapeutics: Breast tumour kinase’s role in breast cancer and hope for breast tumour kinase targeted therapy'. World Journal of Clinical Oncology, 5 (3).  pp. 299 - 310. doi: 10.5306/wjco.v5.i3.299 Download publication 

Li, M. , Yang, S. , Zheng, J.  and Liu, X.   (2014)   'ETEA: A Euclidean minimum spanning tree-based evolutionary algorithm for multi-objective optimization'. Evolutionary Computation, 22 (2).  pp. 189 - 230. doi: 10.1162/EVCO_a_00106 Download publication 

Sandi, C. , Sandi, M. , Virmouni, SA. , Al-Mahdawi, S.  and Pook, MA.   (2014)   'Epigenetic-based therapies for Friedreich ataxia'. Frontiers in Genetics, 5 (JUN).  doi: 10.3389/fgene.2014.00165 Download publication 

Mparmpakas, D. , Zachariades, E. , Sotiriadis, G. , Goumenou, A. , et al.   (2014)   'Differential expression of placental glucocorticoid receptors and growth arrest-specific transcript 5 in term and preterm pregnancies: evidence for involvement of maternal stress'. Obstet Gynecol Int, 2014 pp. 239278 - 239278. doi: 10.1155/2014/239278 Download publication 

Rausanu, S. , Grosan, C. , Wu, Z. , Parvu, O. , et al.   (2014)   'Computational models for inferring biochemical networks'. Neural Computing and Applications. doi: 10.1007/s00521-014-1617-x Download publication 

Virmouni, SA. , Sandi, C. , Al-Mahdawi, S.  and Pook, MA.   (2014)   'Cellular, molecular and functional characterisation of YAC transgenic mouse models of Friedreich Ataxia'. PLoS One, 9 (9).  doi: 10.1371/journal.pone.0107416 Download publication 

Upton, AL. , Grove, JI. , Mahdi, AA. , Briggs, GS. , et al.   (2014)   'Cellular location and activity of Escherichia coli RecG proteins shed light on the function of its structurally unresolved C-terminus'. Nucleic Acids Research, 42 (9).  pp. 5702 - 5714. doi: 10.1093/nar/gku228 Download publication 

Parvu, O.  and Gilbert, D.   (2014)   'Automatic validation of computational models using pseudo-3D spatio-temporal model checking'. BMC Systems Biology, 8 (124).  Download publication 

Hamilton, PB. , Nicol, E. , De-Bastos, ESR. , Williams, RJ. , et al.   (2014)   'Populations of a cyprinid fish are self-sustaining despite widespread feminization of males'. BMC Biology, 12 doi: 10.1186/1741-7007-12-1 Download publication 

Sacchi, L. , Tucker, A. , Counsell, S. , Garway-Heath, D.  and Swift, S.   (2014)   'Improving predictive models of glaucoma severity by incorporating quality indicators'. Artificial Intelligence in Medicine, 60 (2).  pp. 103 - 112. doi: 10.1016/j.artmed.2013.12.002 Download publication 

Rausanu, S.  and Grosan, C.   (2014)   'A hierarchical network model for epidemic spreading. Analysis of A/H1N1 virus spreading in Romania'. Applied Mathematics and Computation, 233 pp. 39 - 54. doi: 10.1016/j.amc.2013.12.176 Download publication 

Sandi, C. , Sandi, M. , Jassal, H. , Ezzatizadeh, V. , et al.   (2014)   'Generation and characterisation of Friedreich ataxia YG8R mouse fibroblast and neural stem cell models'. PLoS One, 9 (2).  doi: 10.1371/journal.pone.0089488 Download publication 

Harris, CA. , Scott, AP. , Johnson, AC. , Panter, GH. , et al.   (2014)   'Principles of sound ecotoxicology'. Environmental Science and Technology, 48 (6).  pp. 3100 - 3111. doi: 10.1021/es4047507 

Mumith, J-A. , Makatsoris, C.  and Karayiannis, TG.   (2014)   'Design of a thermoacoustic heat engine for low temperature waste heat recovery in food manufacturing: A thermoacoustic device for heat recovery'. Applied Thermal Engineering, 65 (1-2).  pp. 588 - 596. doi: 10.1016/j.applthermaleng.2014.01.042 Download publication 

Soldatova, L. , Rocco-Serra, P. , Dumontier, M.  and Shah, NH.   (2014)   'Selected papers from the 16th Annual Bio-Ontologies Special Interest Group Meeting'. Journal of Biomedical Semantics, 5 (Supplement 1).  doi: 10.1186/2041-1480-5-S1-I1 Download publication 

Martin, N. , Salazar-Cardozo, C. , Vercamer, C. , Ott, L. , et al.   (2014)   'Identification of a gene signature of a pre-transformation process by senescence evasion in normal human epidermal keratinocytes'. Molecular Cancer, 13 (1).  doi: 10.1186/1476-4598-13-151 Download publication 

Li, S. , Symonds, ALJ. , Miao, T. , Sanderson, I.  and Wang, P.   (2014)   'Modulation of antigen-specific T-cells as immune therapy for chronic infectious diseases and cancer'. Frontiers in Immunology. doi: 10.3389/fimmu.2014.00293 Download publication 

Ezzatizadeh, V. , Sandi, C. , Sandi, M. , Anjomani-Virmouni, S. , et al.   (2014)   'MutLα heterodimers modify the molecular phenotype of Friedreich ataxia'. PLoS One, 9 (6).  doi: 10.1371/journal.pone.0100523 Download publication 

Leotta, CG. , Federico, C. , Brundo, MV. , Tosi, S.  and Saccone, S.   (2014)   'HLXB9 gene expression, and nuclear location during in vitro neuronal differentiation in the SK-N-BE neuroblastoma cell line'. PLoS One, 9 (8).  doi: 10.1371/journal.pone.0105481 Download publication 

Arican-Goktas, HD. , Ittiprasert, W. , Bridger, JM.  and Knight, M.   (2014)   'Differential spatial repositioning of activated genes in Biomphalaria glabrata snails infected with Schistosoma mansoni'. PLoS Neglected Tropical Diseases, 8 (9).  pp. e3013 - e3013. doi: 10.1371/journal.pntd.0003013 Download publication 

Bo, V. , Curtis, T. , Lysenko, A. , Saqi, M. , et al.   (2014)   'Discovering Study-Specific Gene Regulatory Networks'. PLoS OneDownload publication 

Pires, IM. , Blokland, NJG. , Broos, AWT. , Poujade, F-A. , et al.   (2014)   'HIF-1α-independent hypoxia-induced rapid PTK6 stabilization is associated with increased motility and invasion'. Cancer Biology and Therapy, 15 (10).  pp. 1350 - 1357. doi: 10.4161/cbt.29822 Download publication 

Margiotta-Casaluci, L. , Owen, SF. , Cumming, RI. , De Polo, A. , et al.   (2014)   'Quantitative cross-species extrapolation between humans and fish: The case of the anti-depressant fluoxetine'. PLoS One, 9 (10).  doi: 10.1371/journal.pone.0110467 Download publication 

Johnson, AC.  and Sumpter, JP.   (2014)   'Putting pharmaceuticals into the wider context of challenges to fish populations in rivers'. Philosophical Transactions of the Royal Society B: Biological Sciences, 369 (1656).  doi: 10.1098/rstb.2013.0581 Download publication 

Arnold, KE. , Brown, AR. , Brown, AR. , Ankley, GT.  and Sumpter, JP.   (2014)   'Medicating the environment: Assessing risks of pharmaceuticals to wildlife and ecosystems'. Philosophical Transactions of the Royal Society B: Biological Sciences, 369 (1656).  doi: 10.1098/rstb.2013.0569 

Soldatova, LN. , Nadis, D. , King, RD. , Basu, PS. , et al.   (2014)   'EXACT2: the semantics of biomedical protocols'. BMC Bioinformatics, 15 (Supplement 14).  doi: 10.1186/1471-2105-15-S14-S5 Download publication 

Sahdeo, S. , Scott, BD. , McMackin, MZ. , Jasoliya, M. , et al.   (2014)   'Dyclonine rescues frataxin deficiency in animal models and buccal cells of patients with Friedreich's ataxia'. Human Molecular Genetics, 23 (25).  pp. 6848 - 6862. doi: 10.1093/hmg/ddu408 Download publication 

Li, M. , Yang, S.  and Liu, X.   (2014)   'Diversity comparison of Pareto front approximations in many-objective optimization'. IEEE Transactions on Cybernetics, 44 (12).  pp. 2568 - 2584. doi: 10.1109/TCYB.2014.2310651 Download publication 

Hayashi, G. , Shen, Y. , Pedersen, TL. , Newman, JW. , et al.   (2014)   'Frataxin deficiency increases cyclooxygenase 2 and prostaglandins in cell and animal models of Friedreich's ataxia'. Human Molecular Genetics, 23 (25).  pp. 6838 - 6847. doi: 10.1093/hmg/ddu407 Download publication 

Payne, AM. , Ghorbani, M. , Taylor, S.  and Pook, M.   (2013)   'Comparative (Computational) Analysis of the DNA Methylation Status of Trinucleotide Repeat Expansion Diseases'. Journal ofNucleic Acids

Bourton, EC. , Plowman, PN. , Harvey, AJ. , Adam Zahir, S.  and Parris, CN.   (2013)   'The PARP-1 inhibitor Olaparib causes retention of γ-H2AX foci in BRCA1 heterozygote cells following exposure to gamma radiation'. Journal of Cancer Therapy, 4 (11a).  pp. 44 - 52. doi: 10.4236/jct.2013.411A006 Download publication 

Wazir, U. , Sharma, AK. , Mokbel, K. , Ahmed, MH. , et al.   (2013)   'The clinicopathological significance of lamin A/C, lamin B1 and lamin B receptor mRNA expression in human breast cancer'. Cellular and Molecular Biology Letters. pp. 1 - 17. doi: 10.2478/s11658-013-0109-9 Download publication 

Liu, X. , Taylor, SJE. , Wang, J. , Gao, Q. , et al.   (2013)   'Speeding up systems biology simulations of biochemical pathways using condor'. Concurrency Computation Practice and Experience. doi: 10.1002/cpe.3161 

Kaba, D. , Salazar-Gonzalez, AG. , Li, Y. , Liu, X.  and Serag, A.   (2013)   'Segmentation of retinal blood vessels using gaussian mixture models and expectation maximisation'. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7798 LNCS pp. 105 - 112. doi: 10.1007/978-3-642-37899-7_9 

Liang, J. , Wang, Z.  and Liu, X.   (2013)   'Robust stabilisation for a class of stochastic two-dimensional non-linear systems with time-varying delays'. IET Control Theory and Applications, 7 (13).  pp. 1699 - 1710. doi: 10.1049/iet-cta.2012.0915 

Hinkenjann, A. , Roth, T. , Millberg, J. , Yun, H.  and Li, Y.   (2013)   'Real-time simulation of camera errors and their effect on some basic robotic vision algorithms'. Proceedings - 2013 International Conference on Computer and Robot Vision, CRV 2013. pp. 218 - 225. doi: 10.1109/CRV.2013.50 Download publication 

Jahangirian, M.  and Taylor, SJE.   (2013)   'Profiling e-health projects in Africa: trends and funding patterns'. International Development. doi: 10.1177/0266666913511478 

Wang, Z. , Wu, H. , Liang, J. , Cao, J.  and Liu, X.   (2013)   'On modeling and state estimation for genetic regulatory networks with polytopic uncertainties'. IEEE Transactions on Nanobioscience, 12 (1).  pp. 13 - 20. doi: 10.1109/TNB.2012.2215626 

Wang, Z. , Eatock, J. , McClean, S. , Liu, D. , et al.   (2013)   'Modeling throughput of emergency departments via time series: An expectation maximization algorithm'. ACM Transactions on Management Information Systems, 4 (4).  doi: 10.1145/2544105 

Li, M. , Yang, S. , Liu, X.  and Wang, K.   (2013)   'IPESA-II: Improved Pareto envelope-based selection algorithm II'. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7811 LNCS pp. 143 - 155. doi: 10.1007/978-3-642-37140-0_14 

Alhajri, RA. , Counsell, S.  and Liu, X.   (2013)   'Investigating attributes affecting the performance of WBI users'. Computers and Education, 68 pp. 117 - 128. doi: 10.1016/j.compedu.2013.05.003 Download publication 

Kerkhoven, EJ. , Achcar, F. , Alibu, VP. , Burchmore, RJ. , et al.   (2013)   'Handling Uncertainty in Dynamic Models: The Pentose Phosphate Pathway in Trypanosoma brucei'. PLoS computational biology, 9 pp. e1003371 - e1003371. 

Xie, J. , Hone, K. , Xie, W. , Gao, X. , et al.   (2013)   'Extending twin support vector machine classifier for multi-category classification problems'. Intelligent Data Analysis, 17 (4).  pp. 649 - 664. doi: 10.3233/IDA-130598 Download publication 

Miao, T. , Raymond, M. , Bhullar, P. , Symonds, ALJ. , et al.   (2013)   'Early growth response gene-2 controls IL-17 expression and Th17 differentiation by negatively regulating Batf'. Journal of Immunology, 190 (1).  pp. 58 - 65. doi: 10.4049/jimmunol.1200868. 

Comsa, IM. , Grosan, C.  and Yang, S.   (2013)   'Dynamics in the multi-objective subset sum: Analysing the behavior of population based algorithms'. Studies in Computational Intelligence, 490 pp. 299 - 313. doi: 10.1007/978-3-642-38416-5-12 

Memmert, U. , Peither, A. , Burri, R. , Weber, K. , et al.   (2013)   'Diclofenac: New data on chronic toxicity and bioconcentration in fish'. Environmental Toxicology and Chemistry, 32 (2).  pp. 442 - 452. doi: 10.1002/etc.2085 

Rudolph, CJ. , Upton, AL. , Stockum, A. , Nieduszynski, CA.  and Lloyd, RG.   (2013)   'Avoiding chromosome pathology when replication forks collide'. Nature, 500 (7464).  pp. 608 - 611. doi: 10.1038/nature12312 Download publication 

Zhao, Z. , Liu, F. , Xie, X. , Liu, X.  and Tang, Z.   (2013)   'Asymptotic stability of bidirectional associative memory neural networks with time-varying delays via delta operator approach'. Neurocomputing. doi: 10.1016/j.neucom.2012.12.008 

Arnold, KE. , Boxall, AB. , Brown, AR. , Cuthbert, RJ. , et al.   (2013)   'Assessing the exposure risk and impacts of pharmaceuticals in the environment on individuals and ecosystems'. Biology Letters, 9 (4).  pp. 20130492 - 20130492. doi: 10.1098/rsbl.2013.0492 Download publication 

Sumpter, JP.  and Margiotta-Casaluci, L.   (2014)   'Are some invertebrates exquisitely sensitive to the human pharmaceutical Fluoxetine?'. Aquatic Toxicology, 146 pp. 259 - 260. doi: 10.1016/j.aquatox.2013.11.021 

Anastasiou, AD. , Mouza, AA. , Makatsoris, C.  and Gavriilidis, A.   (2013)   'Application of μ-PIV for investigating liquid film characteristics in an open inclined microchannel'. Experimental Thermal and Fluid Science, 44 pp. 90 - 99. doi: 10.1016/j.expthermflusci.2012.06.001 

Bao, Y. , Vinciotti, V. , Wit, E.  and 't Hoen, PAC.   (2013)   'Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data'. BMC Bioinformatics, 14 doi: 10.1186/1471-2105-14-169 Download publication 

Alsayegh, R. , Paramonov, L.  and Makatsoris, C.   (2013)   'A novel virtual environment for molecular system design'. 2013 IEEE International Conference on Computational Intelligence and Virtual Environments for Measurement Systems and Applications, CIVEMSA 2013 - Proceedings. pp. 37 - 42. doi: 10.1109/CIVEMSA.2013.6617392 

Naiel, A. , Vetter, M. , Plekhanova, O. , Fleischman, E. , et al.   (2013)   'A novel three-colour fluorescence in situ hybridization approach for the detection of t(7;12)(q36;p13) in acute myeloid leukaemia reveals new cryptic three way translocation t(7;12;16)'. Cancers, 5 (1).  pp. 281 - 295. doi: 10.3390/cancers5010281 Download publication 

Yang, S. , Li, M. , Liu, X.  and Zheng, J.   (2013)   'A Grid-Based Evolutionary Algorithm for Many-Objective Optimization'. IEEE Transactions on Evolutionary Computation. doi: 10.1109/TEVC.2012.2227145 

Li, M. , Yang, S. , Liu, X.  and Shen, R.   (2013)   'A comparative study on evolutionary algorithms for many-objective optimization'. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7811 LNCS pp. 261 - 275. doi: 10.1007/978-3-642-37140-0_22 

Sumpter, JP.  and Jobling, S.   (2013)   'The occurrence, causes, and consequences of estrogens in the aquatic environment'. Environmental Toxicology and Chemistry, 32 (2).  pp. 249 - 251. doi: 10.1002/etc.2084 

Chan, PK. , Torres, R. , Yandim, C. , Law, PP. , et al.   (2013)   'Heterochromatinization induced by GAA-repeat hyperexpansion in Friedreich's ataxia can be reduced upon HDAC inhibition by vitamin B3'. Human Molecular Genetics, 22 (13).  pp. 2662 - 2675. 

Bergman, Å. , Heindel, JJ. , Kasten, T. , Byléhn, AS. , et al.   (2013)   'The impact of endocrine disruption: A consensus statement on the state of the science'. Environmental Health Perspectives, 121 (4).  pp. a104 - a106. doi: 10.1289/ehp.1205448 Download publication 

Li, Y. , Swift, S.  and Tucker, A.   (2013)   'Modelling and analysing the dynamics of disease progression from cross-sectional studies'. Journal of Biomedical Informatics, 46 (2).  pp. 266 - 274. doi: 10.1016/j.jbi.2012.11.003 

Green, C. , Williams, R. , Kanda, R. , Churchley, J. , et al.   (2013)   'Modeling of steroid estrogen contamination in UK and South Australian rivers predicts modest increases in concentrations in the future'. Environmental Science and Technology, 47 (13).  pp. 7224 - 7232. doi: 10.1021/es3051058 

Xie, J. , Lei, J. , Xie, W. , Shi, Y.  and Liu, X.   (2013)   'Two-stage hybrid feature selection algorithms for diagnosing erythemato-squamous diseases'. Health Information Science and Systems, 1 Download publication 

Foster, HA. , Estrada-Girona, G. , Themis, M. , Garimberti, E. , et al.   (2013)   'Relative proximity of chromosome territories influences chromosome exchange partners in radiation-induced chromosome rearrangements in primary human bronchial epithelial cells'. Mutation Research - Genetic Toxicology and Environmental Mutagenesis, 756 (1-2).  pp. 66 - 77. doi: 10.1016/j.mrgentox.2013.06.003 Download publication 

Bourton, EC. , Foster, HA. , Plowman, PN. , Harvey, AJ.  and Parris, CN.   (2013)   'Hypersensitivity of BRCA1 Heterozygote Lymphoblastoid Cells to Gamma Radiation and PARP Inhibitors.'. J.Genet Syndr Gene Ther, 4 (5).  Download publication 

Louvieris, P. , Clewley, N.  and Liu, X.   (2013)   'Effects-based feature identification for network intrusion detection'. Neurocomputing. doi: 10.1016/j.neucom.2013.04.038 

Assadi, MZ. , Du, X. , Dalton, J. , Henshaw, S. , et al.   (2013)   'Comparison on intracochlear disturbances between drilling a manual and robotic cochleostomy'. PROCEEDINGS OF THE INSTITUTION OF MECHANICAL ENGINEERS PART H-JOURNAL OF ENGINEERING IN MEDICINE, 227 (9).  pp. 1002 - 1008. doi: 10.1177/0954411913488507 Download publication 

Wang, Z. , Zineddin, B. , Liang, J. , Zeng, N. , et al.   (2013)   'A novel neural network approach to cDNA microarray image segmentation'. Computer Methods and Programs in Biomedicine, 111 (1).  pp. 189 - 198. doi: 10.1016/j.cmpb.2013.03.013 

Wang, Z. , Zineddin, B. , Liang, J. , Zeng, N. , et al.   (2013)   'A novel neural network approach to cDNA microarray image segmentation'. Comput Methods Programs Biomed, 111 (1).  pp. 189 - 198. doi: 10.1016/j.cmpb.2013.03.013 Download publication 

Margiotta-Casaluci, L. , Courant, F. , Antignac, JP. , Le Bizec, B.  and Sumpter, JP.   (2013)   'Identification and quantification of 5α-dihydrotestosterone in the teleost fathead minnow (Pimephales promelas) by gas chromatography-tandem mass spectrometry'. General and Comparative Endocrinology, 191 pp. 202 - 209. doi: 10.1016/j.ygcen.2013.06.017 

Bergman, A. , Andersson, A-M. , Becher, G. , van den Berg, M. , et al.   (2013)   'Science and policy on endocrine disrupters must not be mixed: A reply to a "common sense" intervention by toxicology journal editors'. Environmental Health, 12 pp. . doi: 10.1186/1476-069X-12-69 Download publication 

Shortland, A. , Christopoulou, K.  and Makatsoris, C.   (2013)   'War and famine, peace and light? The economic dynamics of conflict in Somalia 1993-2009'. Journal of Peace Research, 50 (5).  pp. 545 - 561. doi: 10.1177/0022343313492991 

Johnson, AC. , Oldenkamp, R. , Dumont, E.  and Sumpter, JP.   (2013)   'Predicting concentrations of the cytostatic drugs cyclophosphamide, carboplatin, 5-fluorouracil, and capecitabine throughout the sewage effluents and surface waters of europe'. Environmental Toxicology and Chemistry, 32 (9).  pp. 1954 - 1961. doi: 10.1002/etc.2311 

Bannister, R. , Beresford, N. , Granger, DW. , Pounds, NA. , et al.   (2013)   'No substantial changes in estrogen receptor and estrogen-related receptor orthologue gene transcription in Marisa cornuarietis exposed to estrogenic chemicals'. Aquatic Toxicology, 140-141 pp. 19 - 26. doi: 10.1016/j.aquatox.2013.05.002 Download publication 

Eccles, SA. , Eric O Aboagye, EO. , Ali, S. , Anderson, AS. , et al.   (2013)   'Critical research gaps and translational priorities for the successful prevention and treatment of breast cancer'. Breast Cancer Research, 15 (5).  pp. R92. doi: 10.1186/bcr3493 Download publication 

Zhao, Z. , Liu, F. , Xie, X. , Liu, X.  and Tang, Z.   (2013)   'Asymptotic stability of bidirectional associative memory neural networks with time-varying delays via delta operator approach'. Neurocomputing, 117 pp. 40 - 46. doi: 10.1016/j.neucom.2012.12.008 

Rand-Weaver, M. , Patel, A. , Margiotta-Casaluci, L. , Sumpter, JP. , et al.   (2013)   'The read-across hypothesis and environmental risk assessment of pharmaceuticals'. Environmental Science and Technology, 47 (20).  pp. 11384 - 11395. doi: 10.1021/es402065a Download publication 

Shan, Y. , Schoenfeld, RA. , Hayashi, G. , Napoli, E. , et al.   (2013)   'Frataxin deficiency leads to defects in expression of antioxidants and Nrf2 expression in dorsal root ganglia of the Friedreich's Ataxia YG8R mouse model'. Antioxidants and Redox Signaling, 19 (13).  pp. 1481 - 1493. doi: 10.1089/ars.2012.4537 

Johnson, AC. , Dumont, E. , Williams, RJ. , Oldenkamp, R. , et al.   (2013)   'Do concentrations of ethinylestradiol, estradiol, and diclofenac in European rivers exceed proposed EU environmental quality standards?'. Environmental Science and Technology, 47 (21).  pp. 12297 - 12304. doi: 10.1021/es4030035 

Blüthgen, N. , Sumpter, JP. , Odermatt, A.  and Fent, K.   (2013)   'Effects of low concentrations of the antiprogestin mifepristone (RU486) in adults and embryos of zebrafish (Danio rerio): 2. Gene expression analysis and in vitro activity'. Aquatic Toxicology, 144-145 pp. 96 - 104. doi: 10.1016/j.aquatox.2013.09.030 

Blüthgen, N. , Castiglioni, S. , Sumpter, JP.  and Fent, K.   (2013)   'Effects of low concentrations of the antiprogestin mifepristone (RU486) in adults and embryos of zebrafish (Danio rerio): 1. Reproductive and early developmental effects'. Aquatic Toxicology, 144-145 pp. 83 - 95. doi: 10.1016/j.aquatox.2013.09.033 

Zeng, N. , Wang, Z. , Li, Y. , Du, M. , et al.   (2013)   'Time series modeling of nano-gold immunochromatographic assay via expectation maximization algorithm'. IEEE Transactions on Biomedical Engineering, 60 (12).  pp. 3418 - 3424. doi: 10.1109/TBME.2013.2260160 

Lord, J. , Willis, S. , Eatock, J. , Tappenden, P. , et al.   (2013)   'Economic modelling of diagnostic and treatment pathways in National Institute for Health and Care Excellence clinical guidelines: The Modelling Algorithm Pathways in Guidelines (MAPGuide) project'. Health Technology Assessment, 17 (58).  doi: 10.3310/hta17580 Download publication 

Louvieris, P. , Clewley, N.  and Liu, X.   (2013)   'Effects-based feature identification for network intrusion detection'. Neurocomputing, 121 pp. 265 - 273. doi: 10.1016/j.neucom.2013.04.038 

Kaba, D. , Wang, C. , Li, Y. , Salazar-Gonzalez, A. , et al.   (2014)   'Retinal blood vessels extraction using probabilistic modelling'. Health Information Science and Systems, 2 doi: 10.1186/2047-2501-2-2 Download publication 

Button, K. , van Deursen, RW. , Soldatova, L.  and Spasić, I.   (2013)   'TRAK ontology: Defining standard care for the rehabilitation of knee conditions'. Journal of Biomedical Informatics, 46 (4).  pp. 615 - 625. doi: 10.1016/j.jbi.2013.04.009 

López, CO.  and Beasley, JE.   (2013)   'Packing unequal circles using formulation space search'. Computers and Operations Research, 40 (5).  pp. 1276 - 1288. doi: 10.1016/j.cor.2012.11.022 

Gu, X. , Reid, D. , Higham, DJ.  and Gilbert, D.   (2013)   'Mathematical Modelling of Polyamine Metabolism in Bloodstream-Form Trypanosoma brucei: An Application to Drug Target Identification'. PLoS One, 8 (1).  doi: 10.1371/journal.pone.0053734 Download publication 

López, CO.  and Beasley, JE.   (2013)   'A note on solving MINLP's using formulation space search'. Optimization Letters. pp. 1 - 16. doi: 10.1007/s11590-013-0623-8 

Li, L. , Lucille, V. , Sandi, C. , Pook, M. , et al.   (2013)   'Pharmacological screening using an FXN-EGFP cellular genomic reporter assay for the therapy of Friedreich ataxia'. PLoS One, 8 (2).  doi: 10.1371/journal.pone.0055940 Download publication 

Sandi, C. , Al-Mahdawi, S.  and Pook, M.   (2013)   'Epigenetics in Friedreich's ataxia: Challenges and opportunities for therapy'. Genetics Research International, 2013 doi: 10.1155/2013/852080 Download publication 

Woodside-Oriakhi, M. , Lucas, C.  and Beasley, JE.   (2013)   'Portfolio rebalancing with an investment horizon and transaction costs'. Omega (United Kingdom), 41 (2).  pp. 406 - 420. doi: 10.1016/j.omega.2012.03.003 

Soldatova, LN. , Sansone, SA. , Dumontier, M.  and Shah, NH.   (2013)   'Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting'. Journal of Biomedical Semantics, 4 Suppl 1 (Supplement 1).  doi: 10.1186/2041-1480-4-S1-I1 Download publication 

Soldatova, LN. , Rzhetsky, A. , De Grave, K.  and King, RD.   (2013)   'Representation of probabilistic scientific knowledge'. Journal of Biomedical Semantics, 4 Suppl 1 pp. S7 - S7. doi: 10.1186/2041-1480-4-S1-S7 Download publication 

Perdomini, M. , Hick, A. , Puccio, H.  and Pook, MA.   (2013)   'Animal and cellular models of Friedreich ataxia'. Journal of Neurochemistry, 126 (SUPPL.1).  pp. 65 - 79. doi: 10.1111/jnc.12219 

Al-Mahdawi, S. , Sandi, C.  and Pook, M.   (2013)   'Friedreich ataxia patient tissues exhibit increased 5-hydroxymethylcytosine modification and decreased CTCF binding at the FXN locus'. PLoS One, 8 (9).  doi: 10.1371/journal.pone.0074956 Download publication 

Benjamin, AM.  and Beasley, JE.   (2013)   'Metaheuristics with disposal facility positioning for the waste collection VRP with time windows'. Optimization Letters, 7 (7).  pp. 1433 - 1449. doi: 10.1007/s11590-012-0549-6 

Mezali, H.  and Beasley, JE.   (2013)   'Quantile regression for index tracking and enhanced indexation'. Journal of the Operational Research Society, 64 (11).  pp. 1676 - 1692. doi: 10.1057/jors.2012.186 

Heiner, M.  and Gilbert, D.   (2013)   'BioModel engineering for multiscale Systems Biology'. Progress in Biophysics and Molecular Biology. doi: 10.1016/j.pbiomolbio.2012.10.001 Download publication 

Gu, X. , Reid, D. , Higham, DJ.  and Gilbert, D.   (2013)   'Mathematical Modelling of Polyamine Metabolism in Bloodstream-form Trypanosoma brucei: An Application to Drug Target Identification'. PLoS OneDownload publication 

Du, X. , Assadi, MZ. , Jowitt, F. , Brett, PN. , et al.   (2013)   'Robustness analysis of a smart surgical drill for cochleostomy'. International Journal of Medical Robotics and Computer Assisted Surgery, 9 (1).  pp. 119 - 126. doi: 10.1002/rcs.1462 Download publication 

Klingström, T. , Soldatova, L. , Stevens, R. , Roos, TE. , et al.   (2012)   'Workshop on laboratory protocol standards for the molecular methods database'. New Biotechnology

Liu, Y. , Wang, Z.  and Liu, X.   (2012)   'State estimation for discrete-time neural networks with markov-mode-dependent lower and upper bounds on the distributed delays'. Neural Processing Letters, 36 (1).  pp. 1 - 19. doi: 10.1007/s11063-012-9219-z 

Liu, Y. , Wang, Z.  and Liu, X.   (2012)   'Stability analysis for a class of neutral-type neural networks with Markovian jumping parameters and mode-dependent mixed delays'. Neurocomputing, 94 pp. 46 - 53. doi: 10.1016/j.neucom.2012.04.003 

Liu, Y. , Wang, Z.  and Liu, X.   (2012)   'Stability analysis for a class of neutral-type neural networks with Markovian jumping parameters and mode-dependent mixed delays'. Neurocomputing

Grosan, C. , Abraham, A.  and Snasel, V.   (2012)   'Solving polynomial systems using a modified line search approach'. International Journal of Innovative Computing, Information and Control, 8 (1 B).  pp. 501 - 526. 

Yang, F.  and Li, Y.   (2012)   'Robust set-membership filtering for systems with missing measurement: A linear matrix inequality approach'. IET Signal Processing, 6 (4).  pp. 341 - 347. doi: 10.1049/iet-spr.2009.0244 

Tian, Y. , Shi, Y.  and Liu, X.   (2012)   'Recent advances on support vector machines research'. Technological and Economic Development of Economy, 18 (1).  pp. 5 - 33. doi: 10.3846/20294913.2012.661205 

Kugathas, S. , Williams, RJ.  and Sumpter, JP.   (2012)   'Prediction of environmental concentrations of glucocorticoids: The River Thames, UK, as an example'. Environment International, 40 (1).  pp. 15 - 23. doi: 10.1016/j.envint.2011.11.007 

Caldwell, DJ. , Mastrocco, F. , Anderson, PD. , Länge, R.  and Sumpter, JP.   (2012)   'Predicted-no-effect concentrations for the steroid estrogens estrone, 17β-estradiol, estriol, and 17α-ethinylestradiol'. Environmental Toxicology and Chemistry, 31 (6).  pp. 1396 - 1406. doi: 10.1002/etc.1825 

Pavlidis, S. , Swift, S.  and Payne, A.   (2012)   'Pathway based microarray analysis, utilising enzyme compounds and cascade events'. Methods of Information in Medicine, 51 (4).  pp. 323 - 331. doi: 10.3414/ME11-02-0047 

Xie, J. , Lei, J. , Xie, W. , Gao, X. , et al.   (2012)   'Novel hybrid feature selection algorithms for diagnosing erythemato-squamous diseases'. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7231 LNCS pp. 173 - 185. doi: 10.1007/978-3-642-29361-0_21 

Salazar-Gonzalez, A. , Li, Y.  and Kaba, D.   (2012)   'MRF reconstruction of retinal images for the optic disc segmentation'. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7231 LNCS pp. 88 - 99. doi: 10.1007/978-3-642-29361-0_13 

Wei, CH. , Chen, SY.  and Liu, X.   (2012)   'Mammogram retrieval on similar mass lesions'. Computer Methods and Programs in Biomedicine, 106 (3).  pp. 234 - 248. doi: 10.1016/j.cmpb.2010.09.002 

Ruta, A.  and Li, Y.   (2012)   'Learning pairwise image similarities for multi-classification using Kernel Regression Trees'. Pattern Recognition, 45 (4).  pp. 1396 - 1408. doi: 10.1016/j.patcog.2011.09.028 

Peek, N.  and Swift, S.   (2012)   'Intelligent Data Analysis for Knowledge Discovery, Patient Monitoring and Quality Assessment'. Methods of Information in Medicine, 51 (4).  pp. 318 - 322. 

Bartram, AE. , Winter, MJ. , Huggett, DB. , Mccormack, P. , et al.   (2012)   'In vivo and in vitro liver and gill EROD activity in rainbow trout (Oncorhynchus mykiss) exposed to the beta-blocker propranolol'. Environmental Toxicology, 27 (10).  pp. 573 - 582. doi: 10.1002/tox.20684 

Zeng, N. , Wang, Z. , Li, Y. , Du, M.  and Liu, X.   (2012)   'Identification of nonlinear lateral flow immunoassay state-space models via particle filter approach'. IEEE Transactions on Nanotechnology, 11 (2).  pp. 321 - 327. 

Wang, Z. , Shen, B.  and Liu, X.   (2012)   'ℋ <sup>∞</sup> filtering with randomly occurring sensor saturations and missing measurements'. Automatica, 48 (3).  pp. 556 - 562. doi: 10.1016/j.automatica.2012.01.008 

Wang, Z. , Shen, B.  and Liu, X.   (2012)   'H ∞ filtering with randomly occurring sensor saturations and missing measurements'. Automatica

Wei, J.  and Winter, M.   (2012)   'Flow-distributed spikes for Schnakenberg kinetics'. Journal of Mathematical Biology, 64 (1-2).  pp. 211 - 254. doi: 10.1007/s00285-011-0412-x Download publication 

Anderson, PD. , Johnson, AC. , Pfeiffer, D. , Caldwell, DJ. , et al.   (2012)   'Endocrine disruption due to estrogens derived from humans predicted to be low in the majority of U.S. surface waters'. Environmental Toxicology and Chemistry, 31 (6).  pp. 1407 - 1415. doi: 10.1002/etc.1824 

Creton, S. , Aardema, MJ. , Carmichael, PL. , Harvey, JS. , et al.   (2012)   'Cell transformation assays for prediction of carcinogenic potential: state of the science and future research needs'. Mutagenesis, 27 (1).  pp. 93 - 101. doi: 10.1093/mutage/ger053 Download publication 

He, J. , Zhang, Y. , Huang, G. , Xin, Y. , et al.   (2012)   'An association rule analysis framework for complex physiological and genetic data'. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7231 LNCS pp. 131 - 142. doi: 10.1007/978-3-642-29361-0_17 

Zeng, N. , Wang, Z. , Li, Y. , Du, M.  and Liu, X.   (2012)   'A hybrid EKF and switching PSO algorithm for joint state and parameter estimation of lateral flow immunoassay models'. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9 (2).  pp. 321 - 329. doi: 10.1109/TCBB.2011.140 

Liu, M. , Miao, T. , Zhu, H. , Symonds, ALJ. , et al.   (2012)   'IL-2–engineered nano-APC effectively activates viral antigen-mediated T cell responses from chronic Hepatitis B virus-infected patients'. Journal of Immunology, 188 (3).  pp. 1534 - 1543. doi: 10.4049/​jimmunol.1102709 

Grosan, C.  and Hassanien, AE.   (2012)   'Hybrid self organizing neurons and evolutionary algorithms for global optimization'. Journal of Computational and Theoretical Nanoscience, 9 (2).  pp. 304 - 309. doi: 10.1166/jctn.2012.2024 

Liang, J. , Wang, Z.  and Liu, X.   (2012)   'Distributed state estimation for uncertain Markov-type sensor networks with mode-dependent distributed delays'. International Journal of Robust and Nonlinear Control, 22 (3).  pp. 331 - 346. doi: 10.1002/rnc.1699 Download publication 

Stockum, A. , Lloyd, RG.  and Rudolph, C.   (2012)   'On the viability of Escherichia coli cells lacking DNA topoisomerase I'. BMC Microbiology, 12 doi: 10.1186/1471-2180-12-26 Download publication 

Zeng, N. , Wang, Z. , Li, Y. , Du, M.  and Liu, X.   (2012)   'Identification of nonlinear lateral flow immunoassay state-space models via particle filter approach'. Nanotechnology, IEEE Transactions on, 11 (2).  pp. 321 - 327. doi: 10.1109/TNANO.2011.2171193 Download publication 

Wang, Z. , Shen, B.  and Liu, X.   (2012)   'H-infinity filtering with randomly occurring sensor saturations and missing measurements'. Automatica, 48 (3).  pp. 556 - 562. doi: 10.1016/j.automatica.2012.01.008 Download publication 

Yasaei, H. , Gilham, E. , Pickles, JC. , Roberts, TP. , et al.   (2012)   'Carcinogen-specific mutational and epigenetic alterations in INK4A, INK4B and p53 tumour-suppressor genes drive induced senescence bypass in normal diploid mammalian cells'. Oncogene

Zeng, N. , Wang, Z. , Li, Y. , Du, M.  and Liu, X.   (2012)   'A hybrid EKF and switching PSO algorithm for joint state and parameter estimation of lateral flow immunoassay models'. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9 (2).  pp. 321 - 329. doi: 10.1109/TCBB.2011.140 Download publication 

Owen, R.  and Jobling, S.   (2012)   'Environmental science: The hidden costs of flexible fertility'. Nature, 485 (7399).  pp. 441. doi: 10.1038/485441a 

Westgarth-Smith, A. , Roy, DB. , Scholze, M. , Tucker, A.  and Sumpter, JP.   (2012)   'The role of the North Atlantic Oscillation in controlling U.K. butterfly population size and phenology'. Ecological Entomology, 37 (3).  pp. 221 - 232. doi: 10.1111/j.1365-2311.2012.01359.x Download publication 

Liang, J. , Wang, Z. , Liu, X.  and Louvieris, P.   (2012)   'Robust synchronization for 2-D discrete-time coupled dynamical networks'. IEEE Transactions on Neural Networks and Learning Systems, 23 (6).  pp. 942 - 953. doi: 10.1109/TNNLS.2012.2193414 Download publication 

Thein, S. , Chang, YS.  and Makatsoris, C.   (2012)   'A Study of Condition Based Preventive Maintenance Model for Repairable Multi Stage Deteriorating system'. International Journal of Advanced Logistics, 1 (1).  pp. 83 - 102. 

Hameed, MA. , Counsell, S.  and Swift, S.   (2012)   'A meta-analysis of relationships between organizational characteristics and IT innovation adoption in organizations'. Information and Management, 49 (5).  pp. 218 - 232. doi: 10.1016/j.im.2012.05.002 Download publication 

Ly, DQ.  and Makatsoris, C.   (2012)   'A first principles simulation framework for the interactions between a Si(001) surface and a scanning probe'. Journal of Surface Engineered Materials and Advanced Technology. doi: 10.4236/jsemat.2012.223030 Download publication 

Hameed, MA. , Counsell, S.  and Swift, S.   (2012)   'A conceptual model for the process of IT innovation adoption in organizations'. Journal of Engineering and Technology Management - JET-M, 29 (3).  pp. 358 - 390. doi: 10.1016/j.jengtecman.2012.03.007 

Shen, B. , Wang, Z.  and Liu, X.   (2012)   'Sampled-data synchronization control of dynamical networks with stochastic sampling'. IEEE Transactions on Automatic Control, 57 (10).  pp. 2644 - 2650. doi: 10.1109/TAC.2012.2190179 Download publication 

Tang, Y. , Wang, Z. , Gao, H. , Swift, S.  and Kurths, J.   (2012)   'A constrained evolutionary computation method for detecting controlling regions of cortical networks'. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9 (6).  pp. 1569 - 1581. doi: 10.1109/TCBB.2012.124 

Li, S. , Miao, T. , Sebastian, M. , Bhullar, P. , et al.   (2012)   'The transcription factors Egr2 and Egr3 are essential for the control of inflammation and antigen-induced proliferation of B and T cells'. Immunity, 37 (4).  pp. 685 - 696. doi: 10.1016/j.immuni.2012.08.001 Download publication 

Du, X. , Assadi, MZ. , Jowitt, F. , Brett, PN. , et al.   (2013)   'Robustness analysis of a smart surgical drill for cochleostomy'. The International Journal of Medical Robotics and Computer Assisted Surgery, 9 (1).  pp. 119 - 126. doi: 10.1002/rcs.1462 

Liang, J. , Wang, Z. , Shen, B.  and Liu, X.   (2012)   'Distributed state estimation in sensor networks with randomly occurring nonlinearities subject to time delays'. ACM Transactions on Sensor Networks, 9 (1).  doi: 10.1145/2379799.2379803 Download publication 

Etchells, JP. , Moore, L. , Jiang, WZ. , Prescott, H. , et al.   (2012)   'A role for BELLRINGER in cell wall development is supported by loss-of-function phenotypes'. BMC Plant Biology, 12 doi: 10.1186/1471-2229-12-212 Download publication 

Foster, HA. , Griffin, DK.  and Bridger, JM.   (2012)   'Interphase chromosome positioning in in vitro porcine cells and ex vivo porcine tissues'. BMC Cell Biology, 13 doi: 10.1186/1471-2121-13-30 Download publication 

Ruchmond, CJ. , Miras, HN. , de la Oliva, AR. , Zhang, H. , et al.   (2012)   'A flow-system array for the discovery and scale up of inorganic clusters'. Nature Chemistry. doi: 10.1038/nchem.1489 

Adema, CM. , Bayne, CJ. , Bridger, JM. , Knight, M. , et al.   (2012)   'Will all scientists working on snails and the diseases they transmit please stand up?'. PLoS Neglected Tropical Diseases, 6 (12).  pp. . doi: 10.1371/journal.pntd.0001835 Download publication 

Yilmaz, B. , Makatsoris, C.  and Chang, YS.   (2012)   'Adaptive Electronics Manufacturing Services Using Intelligent Agents'. International Journal of Advanced Logistics, 1 (2).  pp. 70 - 91. doi: 10.1080/2287108X.2012.11006077 

Margiotta-Casaluci, L. , Hannah, RE.  and Sumpter, JP.   (2013)   'Mode of action of human pharmaceuticals in fish: The effects of the 5-alpha-reductase inhibitor, dutasteride, on reproduction as a case study'. Aquatic Toxicology, 128-129 pp. 113 - 123. doi: 10.1016/j.aquatox.2012.12.003 

Sainsbury, S. , Ren, J. , Saunders, NJ. , Stuart, DI.  and Owens, RJ.   (2012)   'Structure of the regulatory domain of the LysR family regulator NMB2055 (MetR-like protein) from Neisseria meningitidis'. Acta Crystallographica Section F, 68 (7).  pp. 730 - 737. doi: 10.1107/S1744309112010603 Download publication 

Benner, MF. , Ballabio, E. , van Kester, MS. , Saunders, NJ. , et al.   (2012)   'Primary cutaneous anaplastic large cell lymphoma shows a distinct miRNA expression profile and reveals differences from tumor-stage mycosis fungoides'. Experimental Dermatology, 21 (8).  pp. 632 - 634. doi: 10.1111/j.1600-0625.2012.01548.x Download publication 

Xia, H. , Cao, Y. , Dai, X. , Marelja, Z. , et al.   (2012)   'Novel frataxin isoforms may contribute to the pathological mechanism of friedreich ataxia'. PLoS ONE, 7 (10).  doi: 10.1371/journal.pone.0047847 Download publication 

Bourn, RL. , Pinto, RM. , Sandi, C. , Al-Mahdawi, S. , et al.   (2012)   'Pms2 suppresses large expansions of the (GAA·TTC)n sequence in neuronal tissues'. PLoS One, 7 (10).  doi: 10.1371/journal.pone.0047085 Download publication 

Mezali, H.  and Beasley, JE.   (2012)   'Index tracking with fixed and variable transaction costs'. Optimization Letters. pp. 1 - 20. doi: 10.1007/s11590-012-0534-0 

Anken, F.  and Beasley, JE.   (2012)   'Corporate structure optimisation for multinational companies'. Omega, 40 (2).  pp. 230 - 243. doi: 10.1016/j.omega.2011.06.003 

Moffat, CS. , Ingle, RA. , Wathugala, DL. , Saunders, NJ. , et al.   (2012)   'ERF5 and ERF6 play redundant roles as positive regulators of JA/Et-mediated defense against botrytis cinerea in arabidopsis'. PLoS One, 7 (4).  doi: 10.1371/journal.pone.0035995 Download publication 

Gao, Q. , Gilbert, D. , Heiner, M. , Liu, F. , et al.   (2013)   'Multiscale modeling and analysis of planar cell polarity in the drosophila wing'. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (2).  pp. 337 - 351. doi: 10.1109/TCBB.2012.101 

Soldatova, L. , Gao, Q.  and Gilbert, D.   (2012)   'Towards an ontology of biomodelling'. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7605 LNBI pp. 390 - 393. doi: 10.1007/978-3-642-33636-2_28 

Paterson, A. , Ashtari, M. , Ribe, D. , Stenbeck, G.  and Tucker, A.   (2012)   'Intelligent data analysis to model and understand live cell time-lapse sequences'. Methods of Information in Medicine, 51 (4).  pp. 332 - 340. doi: 10.3414/ME11-02-0041 

Tucker, A.  and Duplisea, D.   (2012)   'Bioinformatics tools in predictive ecology: Applications to fisheries'. Philosophical Transactions of the Royal Society: Part B, 367 (1586).  pp. 279 - 290. doi: 10.1098/rstb.2011.0184 Download publication 

Tomassini, B. , Arcuri, G. , Fortuni, S. , Condò, I. , et al.   (2012)   'Interferon gamma upregulates frataxin and corrects the functional deficits in a Friedreich ataxia model'. Human Molecular Genetics, 21 (13).  pp. 2855 - 2861. doi: 10.1093/hmg/dds110 Download publication 

Ezzatizadeh, V. , Mouro Pinto, R. , Sandi, C. , Sandi, M. , et al.   (2012)   'The mismatch repair system protects against intergenerational GAA repeat instability in a Friedreich ataxia mouse model'. Neurobiology of Disease, 46 (1).  pp. 165 - 171. doi: 10.1016/j.nbd.2012.01.002 Download publication 

Al-Hamzawi, R. , Yu, K. , Vinciotti, V.  and Tucker, A.   (2011)   'Prior elicitation for mixed quantile regression with allometric model'. Environmetrics, 22 pp. 911 - 920. 

Lavrač, N. , Vavpetič, A. , Soldatova, L. , Trajkovski, I.  and Novak, PK.   (2011)   'Using ontologies in semantic data mining with SEGS and g-SEGS'. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 6926 LNAI pp. 165 - 178. doi: 10.1007/978-3-642-24477-3_15 

Kugathas, S.  and Sumpter, JP.   (2011)   'Synthetic glucocorticoids in the environment: First results on their potential impacts on fish'. Environmental Science and Technology, 45 (6).  pp. 2377 - 2383. doi: 10.1021/es104105e 

Chen, L. , Lam, J.  and Wang, Z.   (2011)   'Special issue on "analysis and control of biological networks"'. Asian Journal of Control, 13 (5).  pp. 595 - 596. 

Yang, F.  and Li, Y.   (2011)   'Set-membership filtering for polytopic uncertain discrete-time systems'. International Journal of General Systems, 40 (7).  pp. 741 - 754. doi: 10.1080/03081079.2011.592831 

Anagnostou, A. , Eatock, J.  and Taylor, SJE.   (2011)   'Response to Forsberg et al (2011) Managing health care decisions and improvement through simulation modeling: Modeling versus modelling'. Quality Management in Health Care, 20 (3).  pp. 246 - 247. doi: 10.1097/QMH.0b013e318222a34d 

Soldatova, L.  and Rzhetsky, A.   (2011)   'Representation of research hypotheses'. Journal of Biomedical Semantics, 1 (1).  Download publication 

Fent, K.  and Sumpter, JP.   (2011)   'Progress and promises in toxicogenomics in aquatic toxicology: Is technical innovation driving scientific innovation?'. Aquatic Toxicology

Fent, K.  and Sumpter, JP.   (2011)   'Progress and promises in toxicogenomics in aquatic toxicology: Is technical innovation driving scientific innovation?'. Aquatic Toxicology, 105 (Supplement 3-4).  pp. 25 - 39. 

Bridger, JM. , Eskiw, CH. , Makarov, EM. , Tree, D.  and Kill, IR.   (2011)   'Progeria Research Day at Brunel University'. Nucleus, 2 (6).  pp. 1 - 6. 

Thangaraj, R. , Chelliah, TR. , Pant, M. , Abraham, A.  and Grosan, C.   (2011)   'Optimal gain tuning of PI speed controller in induction motor drives using particle swarm optimization'. Logic Journal of the IGPL, 19 (2).  pp. 343 - 356. doi: 10.1093/jigpal/jzq031 

Knight, M. , Ittiprasert, W. , Odoemelam, EC. , Adema, CM. , et al.   (2011)   'Non-random organization of the Biomphalaria glabrata genome in interphase Bge cells and the spatial repositioning of activated genes in cells co-cultured with Schistosoma mansoni'. International Journal for Parasitology, 41 (1).  pp. 61 - 70. doi: 10.1016/j.ijpara.2010.07.015 Download publication 

Grosan, C.  and Abraham, A.   (2011)   'Intelligent Systems: A Modern Approach'. Intelligent Systems Reference Library, 17 doi: 10.1007/978-3-642-21004-4 

Janna, H. , Scrimshaw, MD. , Williams, RJ. , Churchley, J.  and Sumpter, JP.   (2011)   'From dishwasher to tap? Xenobiotic substances benzotriazole and tolyltriazole in the environment'. Environmental Science and Technology, 45 (9).  pp. 3858 - 3864. Download publication 

Giltrow, E. , Eccles, PD. , Hutchinson, TH. , Sumpter, JP.  and Rand-Weaver, M.   (2011)   'Characterisation and expression of β1-, β2- and β3-adrenergic receptors in the fathead minnow (Pimephales promelas)'. General and Comparative Endocrinology

Margiotta-Casaluci, L.  and Sumpter, JP.   (2011)   '5α-Dihydrotestosterone is a potent androgen in the fathead minnow (Pimephales promelas)'. General and Comparative Endocrinology, 171 (3).  pp. 309 - 318. 

Ede, C. , Rudolph, CJ. , Lehmann, S. , Schürer, KA.  and Kramer, W.   (2011)   'Budding yeast Mph1 promotes sister chromatid interactions by a mechanism involving strand invasion'. DNA Repair, 10 (1).  pp. 45 - 55. doi: 10.1016/j.dnarep.2010.09.009 

Tupper, J. , Crompton, MR.  and Harvey, AJ.   (2011)   'Breast tumor kinase (Brk/PTK6) plays a role in the differentiation of primary keratinocytes'. Archives of Dermatological Research, 303 (4).  pp. 293 - 297. doi: 10.1007/s00403-010-1118-4 Download publication 

Atkinson, J. , Gupta, MK. , Bell, H. , McGlynn, P. , et al.   (2011)   'Localization of an accessory helicase at the replisome is critical in sustaining efficient genome duplication'. Nucleic Acids Research, 39 (3).  pp. 949 - 957. doi: 10.1093/nar/gkq889 Download publication 

Ruta, A. , Porikli, F. , Watanabe, S.  and Li, Y.   (2011)   'In-vehicle camera traffic sign detection and recognition'. Machine Vision and Applications, 22 (2).  pp. 359 - 375. doi: 10.1007/s00138-009-0231-x 

Liang, J. , Wang, Z.  and Liu, X.   (2011)   'Distributed state estimation for discrete-time sensor networks with randomly varying nonlinearities and missing measurements'. IEEE Transactions on Neural Networks, 22 (3).  pp. 486 - 496. doi: 10.1109/TNN.2011.2105501 Download publication 

Grosan, C. , Abraham, A.  and Hassainen, A.   (2011)   'A line search approach for high dimensional function optimization'. Telecommunication Systems, 46 (3).  pp. 217 - 243. doi: 10.1007/s11235-010-9288-0 

Liang, J. , Wang, Z.  and Liu, X.   (2011)   'Robust synchronization of a class of coupled delayed networks with multiple stochastic disturbances: The continuous-time case'. International Journal of Modern Physics B, 25 (6).  pp. 757 - 780. doi: 10.1142/S0217979211058079 Download publication 

Chrysostomou, K. , Chen, SY.  and Liu, XH.   (2011)   'Identifying user preferences with Wrapper-based Decision Trees'. Expert Systems with Applications, 38 (4).  pp. 3294 - 3303. doi: 10.1016/j.eswa.2010.08.115 

Li, S. , Symonds, ALJ. , Zhu, B. , Liu, M. , et al.   (2011)   'Early growth response gene-2 (Egr-2) regulates the development of B and T cells'. PLoS ONE, 6 (4).  doi: 10.1371/journal.pone.0018498 Download publication 

Aung, MM. , Liang, FW. , Chang, YS. , Makatsoris, C.  and Chang, J.   (2011)   'RFID- and WSN-based intelligent cold chain management'. International Journal of Manufacturing Research, 6 (2).  pp. 91 - 109. doi: 10.1504/IJMR.2011.040005 

Ballabio, E. , Regan, R. , Garimberti, E. , Harbott, J. , et al.   (2011)   'Genomic imbalances are confined to non-proliferating cells in paediatric patients with acute myeloid leukaemia and a normal or incomplete karyotype'. PLoS ONE, 6 (6).  doi: 10.1371/journal.pone.0020607 Download publication 

Aoki, KA. , Harris, CA. , Katsiadaki, I.  and Sumpter, JP.   (2011)   'Evidence suggesting that di-n-butyl phthalate has antiandrogenic effects in fish'. Environmental Toxicology and Chemistry, 30 (6).  pp. 1338 - 1345. doi: 10.1002/etc.502 Download publication 

Brian, JV. , Beresford, N. , Margiotta-Casaluci, L.  and Sumpter, JP.   (2011)   'Preliminary data on the influence of rearing temperature on the growth and reproductive status of fathead minnows Pimephales promelas'. Journal of Fish Biology, 79 (1).  pp. 80 - 88. doi: 10.1111/j.1095-8649.2011.02993.x Download publication 

Zeng, N. , Wang, Z. , Li, Y. , Du, M.  and Liu, X.   (2011)   'Inference of nonlinear state-space models for sandwich-type lateral flow immunoassay using extended Kalman filtering'. IEEE Transactions on Biomedical Engineering, 58 (7).  pp. 1959 - 1966. doi: 10.1109/TBME.2011.2106502 Download publication 

Mehta, I. , Eskiw, C. , Aricane, H. , Kill, I.  and Bridger, J.   (2011)   'Farnesyltransferase inhibitor treatment restores chromosome territory positions and active chromosome dynamics in Hutchinson-Gilford Progeria syndrome cells.'. Genome Biology, 12 (8).  

Mehta, IS. , Arican, HD. , Eskiw, CH. , Kill, IR.  and Bridger, JM.   (2011)   'Farnesyltransferase inhibitor treatment restores chromosome territory positions and active chromosome dynamics in Hutchinson-Gilford Progeria syndrome cells.'. Genome Biology: biology for the post-genomic era, 12 (8).  doi: 10.1186/gb-2011-12-8-r74 Download publication 

Hussaini, N. , Winter, M.  and Gumel, AB.   (2011)   'Qualitative assessment of the role of public health education program on HIV transmission dynamics'. Mathematical Medicine and Biology, 28 (3).  pp. 245 - 270. doi: 10.1093/imammb/dqq009 

Shen, B. , Wang, ZD.  and Liu, XH.   (2011)   'A stochastic sampled-data approach to distributed H-infinity filtering in sensor networks'. IEEE Transactions on Circuits and Systems Part 1: Regular Papers, 58 (9).  pp. 2237 - 2246. doi: 10.1109/TCSI.2011.2112594 

Giltrow, E. , Eccles, PD. , Hutchinson, TH. , Sumpter, JP.  and Rand-Weaver, M.   (2011)   'Characterisation and expression of β1-, β2- and β3-adrenergic receptors in the fathead minnow (Pimephales promelas)'. General and Comparative Endocrinology, 173 (3).  pp. 483 - 490. doi: 10.1016/j.ygcen.2011.07.006 Download publication 

Pavlidis, SP. , Payne, AM.  and Swift, SM.   (2011)   'Multi-membership gene regulation in pathway based microarray analysis'. Algorithms for Molecular Biology, 6 doi: 10.1186/1748-7188-6-22 Download publication 

King, RD. , Liakata, M. , Lu, C. , Soldatova, LN.  and Oliver, SG.   (2011)   'On the formalization and reuse of scientific research'. Journal of the Royal Society Interface, 8 (63).  pp. 1440 - 1448. doi: 10.1098/rsif.2011.0029 Download publication 

Ly, DQ. , Paramonov, L. , Davidson, C. , Ramsden, J. , et al.   (2011)   'The Matter Compiler—towards atomically precise engineering and manufacture'. Nanotechnology Perceptions, 7 pp. 199 - 217. 

Touraud, E. , Roig, B. , Sumpter, JP.  and Coetsier, C.   (2011)   'Drug residues and endocrine disruptors in drinking water: Risk for humans?'. International Journal of Hygiene and Environmental Health, 214 pp. 437 - 441. doi: 10.1016/j.ijheh.2011.06.003 

Zineddin, B. , Wang, Z.  and Liu, X.   (2011)   'Cellular neural networks, Navier-Stokes equation and microarray image reconstruction'. IEEE Transactions on Image Processing, 20 (11).  pp. 3296 - 3301. doi: 10.1109/TIP.2011.2159231 Download publication 

Patani, N. , Jiang, WG. , Newbold, RF.  and Mokbel, K.   (2011)   'Histone-modifier Gene Expression Profiles Are Associated with Pathological and Clinical Outcomes in Human Breast Cancer'. ANTICANCER RESEARCH, 31 pp. 4115 - 4125. 

Bridger, JM.   (2011)   'Chromobility: the rapid movement of chromosomes in interphase nuclei'. Biochemical Society Transactions, 39 (6).  pp. 1747 - 1751. doi: 10.1042/BST20110696 Download publication 

López, CO.  and Beasley, JE.   (2011)   'A heuristic for the circle packing problem with a variety of containers'. European Journal of Operational Research, 214 (3).  pp. 512 - 525. doi: 10.1016/j.ejor.2011.04.024 

Anvar, SY. , Tucker, A. , Vinciotti, V. , Venema, A. , et al.   (2011)   'Interspecies translation of disease networks increases robustness and predictive accuracy'. PLoS Computational Biology, 7 (11).  doi: 10.1371/journal.pcbi.1002258 Download publication 

Pey, J. , Prada, J. , Beasley, JE.  and Planes, FJ.   (2011)   'Path finding methods accounting for stoichiometry in metabolic networks'. Genome Biology, 12 (5).  pp. R49 - R49. doi: 10.1186/gb-2011-12-5-r49 Download publication 

Sandi, C. , Pinto, RM. , Al-Mahdawi, S. , Ezzatizadeh, V. , et al.   (2011)   'Prolonged treatment with pimelic o-aminobenzamide HDAC inhibitors ameliorates the disease phenotype of a Friedreich ataxia mouse model'. Neurobiology of Disease, 42 (3).  pp. 496 - 505. 

Saunders, NJ. , Trivedi, UH. , Thomson, ML. , Doig, C. , et al.   (2011)   'Deep resequencing of serial sputum isolates of Mycobacterium tuberculosis during therapeutic failure due to poor compliance reveals stepwise mutation of key resistance genes on an otherwise stable genetic background'. Journal of Infection, 62 (3).  pp. 212 - 217. doi: 10.1016/j.jinf.2011.01.003 

Chi, JX. , Ballabio, E. , Chen, XH. , Kusec, R. , et al.   (2011)   'MicroRNA expression in multiple myeloma is associated with genetic subtype, isotype and survival'. Biology Direct, 6 doi: 10.1186/1745-6150-6-23 Download publication 

van Kester, MS. , Ballabio, E. , Benner, MF. , Chen, XH. , et al.   (2011)   'miRNA expression profiling of mycosis fungoides'. Molecular Oncology, 5 (3).  pp. 273 - 280. doi: 10.1016/j.molonc.2011.02.003 

Porter, SL. , Wilkinson, DA. , Byles, ED. , Wadhams, GH. , et al.   (2011)   'Genome sequence of Rhodobacter sphaeroides strain WS8N'. Journal of Bacteriology, 193 (15).  pp. 4027 - 4028. doi: 10.1128/JB.05257-11 Download publication 

Whalley, HJ. , Sargeant, AW. , Steele, JF. , Lacoere, T. , et al.   (2011)   'Transcriptomic analysis reveals calcium regulation of specific promoter motifs in Arabidopsis'. Plant Cell, 23 (11).  pp. 4079 - 4095. doi: 10.1105/tpc.111.090480 

Vijayakrishnan, S. , Callow, P. , Nutley, MA. , McGow, DP. , et al.   (2011)   'Variation in the organization and subunit composition of the mammalian pyruvate dehydrogenase complex E2/E3BP core assembly'. Biochemical Journal, 437 (3).  pp. 565 - 574. doi: 10.1042/BJ20101784 Download publication 

Sparkes, A. , Aubrey, W. , Byrne, E. , Clare, A. , et al.   (2010)   'Towards Robot Scientists for autonomous scientific discovery'. Automated Experimentation, 2 (1).  doi: 10.1186/1759-4499-2-1 

Owen, SF. , Huggett, DB. , Hutchinson, TH. , Hetheridge, MJ. , et al.   (2010)   'The value of repeating studies and multiple controls: Replicated 28-day growth studies of rainbow trout exposed to clofibric acid'. Environmental Toxicology and Chemistry, 29 (12).  pp. 2831 - 2839. 

Hala, D. , Bristeau, S. , Dagnac, T.  and Jobling, S.   (2010)   'The unexpected sources of organotin contamination in aquatic toxicological laboratory studies'. Aquatic Toxicology, 96 (4).  pp. 314 - 318. doi: 10.1016/j.aquatox.2009.11.015 

Scott, AP. , Sumpter, JP.  and Stacey, N.   (2010)   'The role of the maturation-inducing steroid, 17,20β-dihydroxypregn-4-en-3-one, in male fishes: A review'. Journal of Fish Biology, 76 (1).  pp. 183 - 224. 

Tarazona, JV. , Escher, BI. , Giltrow, E. , Sumpter, J.  and Knacker, T.   (2010)   'Targeting the environmental risk assessment of pharmaceuticals: Facts and fantasies'. Integrated Environmental Assessment and Management, 6 (SUPPL. 1).  pp. 603 - 613. 

Yang, F.  and Li, Y.   (2010)   'Set-membership fuzzy filtering for nonlinear discrete-time systems'. IEEE Transactions on Systems, Man and Cybernetics: Part B, 40 (1).  pp. 116 - 124. doi: 10.1109/TSMCB.2009.2020436 

Laitano, O. , Kalsi, KK. , Pook, M. , Oliveira, AR.  and González-Alonso, J.   (2010)   'Separate and combined effects of heat stress and exercise on circulatory markers of oxidative stress in euhydrated humans'. European Journal of Applied Physiology, 110 (5).  pp. 953 - 960. doi: 10.1007/s00421-010-1577-5 

Ruta, A. , Li, Y.  and Liu, XH.   (2010)   'Real-time traffic sign recognition from video by class-specific discriminative features'. Pattern Recognition, 43 (1).  pp. 416 - 430. doi: 10.1016/j.patcog.2009.05.018 

Mehta, IS. , Amira, M. , Harvey, AJ.  and Bridger, JM.   (2010)   'Rapid chromosome territory relocation by nuclear motor activity in response to serum removal in primary human fibroblasts'. Genome Biology, 11 (1).  doi: 10.1186/gb-2010-11-1-r5 Download publication 

Sumpter, JP.   (2010)   'Pharmaceuticals in the environment: Moving from a problem to a solution'. . pp. 11 - 22. doi: 10.1007/978-3-642-05199-9_2 

Yang, F. , Wang, W. , Niu, Y.  and Li, Y.   (2010)   'Observer-based H<inf>∞</inf>control for networked systems with consecutive packet delays and losses'. International Journal of Control, Automation and Systems, 8 (4).  pp. 769 - 775. doi: 10.1007/s12555-010-0408-0 

Wei, C-H. , Chen, SY.  and Liu, X.   (2010)   'Mammogram retrieval on similar mass lesions'. Computer Methods and Programs in Biomedicine

Mparmpakas, D. , Zachariades, E. , Foster, H. , Kara, A. , et al.   (2010)   'Expression of mTOR and downstream signalling components in the JEG-3 and BeWo human placental choriocarcinoma cell lines'. International Journal of Molecular Medicine, 25 (1).  pp. 65 - 69. doi: 10.3892/ijmm_00000314 Download publication 

Tam, B. , Ma, X. , Webb, DJ. , Holding, DJ.  and Brett, PN.   (2010)   'Discriminating contact in lumen with a moving flexible digit using fibre Bragg grating sensing elements'. Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine, 224 (6).  pp. 765 - 774. doi: 10.1243/09544119JEIM676 

Ismail, W. , Swift, S.  and Hassan, R.   (2010)   'Detecting leukaemia (AML) blood cells using Cellular Automata and heuristic search'. Lecture Notes in Computer Science, 6065 pp. 54 - 66. doi: 10.1007/978-3-642-13062-5_7 

Qi, D. , King, RD. , Hopkins, A. , Bickerton, GR.  and Soldatova, LN.   (2010)   'An ontology for description of drug discovery investigations.'. Journal of Integrative Bioinformatics, 25 pp. . doi: 10.2390/biecoll-jib-2010-126 

Taylor, R. , Du, X. , Proops, D. , Reid, A. , et al.   (2010)   'A sensory-guided surgical micro-drill'. Proceedings of the Institution of Mechanical Engineers Part C: Journal of Mechanical Engineering Science, 224 (C7).  pp. 1531 - 1537. doi: 10.1243/09544062JMES1933 Download publication 

Abbaszadeh, F. , Clingen, PH. , Arlett, C. , Plowman, PN. , et al.   (2010)   'A novel splice variant of the DNA-PKcs gene is associated with clinical and cellular radiosensitvity in a xeroderma pigmentosum patient'. Journal of Medical Genetics, 46 (11).  pp. 1 - 24. doi: 10.1136/jmg.2009.068866 Download publication 

Sheng, WG. , Tucker, A.  and Liu, XH.   (2010)   'A niching genetic k-means algorithm and its applications to gene expression data'. Soft Computing - A Fusion of Foundations, Methodologies and Applications, 14 (1).  pp. 9 - 19. doi: 10.1007/s00500-008-0386-9 

Mehta, IS. , Bridger, JM.  and Kill, IR.   (2010)   'Progeria, the nucleolus and farnesyltransferase inhibitors.'. Biochem Soc Trans, 38 (Pt 1).  pp. 287 - 291. doi: 10.1042/BST0380287 

Elcock, LS.  and Bridger, JM.   (2010)   'Exploring the relationship between interphase gene positioning, transcriptional regulation and the nuclear matrix.'. Biochem Soc Trans, 38 (Pt 1).  pp. 263 - 267. doi: 10.1042/BST0380263 

Rudolph, CJ. , Upton, AL. , Briggs, GS.  and Lloyd, RG.   (2010)   'Is RecG a general guardian of the bacterial genome?'. DNA Repair, 9 (3).  pp. 210 - 223. doi: 10.1016/j.dnarep.2009.12.014 

Metcalfe, CD. , Kidd, KA.  and Sumpter, JP.   (2010)   'Chemically induced alterations to gonadal differentiation in fish'. , 2 pp. 144 - 165. 

Al Sarakbi, W. , Reefy, S. , Jiang, WG. , Roberts, T. , et al.   (2010)   'Evidence of a tumour suppressor function for DLEC1 in human breast cancer'. Anticancer Res., 30 (4).  pp. 1079 - 1082. 

Loizidou, MA. , Cariolou, MA. , Neuhausen, SL. , Newbold, RF. , et al.   (2010)   'Genetic variation in genes interacting with BRCA1/2 and risk of breast cancer in the Cypriot population'. Breast Cancer Research and Treatment, 121 (1).  pp. 147 - 156. doi: 10.1007/s10549-009-0518-7 Download publication 

Brett, PN.  and Rodriguez Y Baena, F.   (2009)   'Special issue on microtechnologies for surgery'. Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine, 224 (6).  pp. i - ii. doi: 10.1177/095441191022400601 

Brinkman, RR. , Courtot, M. , Derom, D. , Fostel, JM. , et al.   (2010)   'Modeling biomedical experimental processes with OBI'. Journal of Biomedical Semantics, 1 (Suppl 1).  pp. . doi: 10.1186/2041-1480-1-S1-S7 Download publication 

Grosan, C.  and Abraham, A.   (2010)   'Approximating Pareto frontier using a hybrid line search approach'. Information Sciences, 180 (14).  pp. 2674 - 2695. doi: 10.1016/j.ins.2009.12.018 Download publication 

Stimpson, KM. , Song, IY. , Jauch, A. , Holtgreve-Grez, H. , et al.   (2010)   'Telomere disruption results in non-random formation of De Novo dicentric chromosomes involving acrocentric human chromosomes'. PLOS Genetics, 6 (8).  doi: 10.1371/journal.pgen.1001061 Download publication 

Mustafee, N. , Katsaliaki, K.  and Taylor, SJE.   (2010)   'Profiling literature in healthcare simulation'. SIMULATION: Transactions of the Society of Modelling and Simulation International, 86 pp. 543 - 558. doi: 10.1177/0037549709359090 

Pan, W. , Wang, Z. , Gao, H.  and Liu, X.   (2010)   'Monostability and multistability of genetic regulatory networks with different types of regulation functions'. Nonlinear Analysis: Real World Applications, 11 (4).  pp. 3170 - 3185. doi: 10.1016/j.nonrwa.2009.11.011 Download publication 

Gilbert, D. , Jaramillo, A. , Krasnogor, N.  and de Lorenzo, V.   (2010)   'Synthetic biology gains momentum in Europe'. Journal for Systems and Synthetic Biology, 4 (3).  pp. 145 - 147. doi: 10.1007/s11693-010-9065-0 

Newbold, RF.  and Mokbel, K.   (2010)   'Evidence for a tumour suppressor function of SETD2 in human breast cancer: a new hypothesis.'. Anticancer Res, 30 (9).  pp. 3309 - 3311. 

Foster, H. , Coley, HM. , Goumenou, A. , Pados, G. , et al.   (2010)   'Differential expression of mTOR signalling components in drug resistance in ovarian cancer'. Anticancer Research, 30 (9).  pp. 3529 - 3534. Download publication 

Zineddin, B. , Wang, Z. , Shi, Y. , Li, Y. , et al.   (2010)   'A multi-view approach to cDNA micro-array analysis'. International Journal of Computational Biology and Drug Design, 3 (2).  pp. 91 - 111. doi: 10.1504/IJCBDD.2010.035237 Download publication 

Rudolph, CJ. , Mahdi, AA. , Upton, AL.  and Lloyd, RG.   (2010)   'RecG protein and single-strand DNA exonucleases avoid cell lethality associated with PriA helicase activity in Escherichia coli'. Genetics, 186 (2).  pp. 473 - 492. doi: 10.1534/genetics.110.120691 

Patani, N. , Jiang, W. , Newbold, R.  and Mokbel, K.   (2010)   'Prognostic implications of carboxyl-terminus of Hsc70 interacting protein and lysyl-oxidase expression in human breast cancer'. Journal of Carcinogenesis, 9 (Online Paper).  pp. 9 - 9. doi: 10.4103/1477-3163.72505 Download publication 

Ruta, A. , Li, Y.  and Liu, X.   (2010)   'Robust class similarity measure for traffic sign recognition'. IEEE Transactions on Intelligent Transportation Systems, 11 (4).  pp. 846 - 855. doi: 10.1109/TITS.2010.2051427 

Szczerbal, I.  and Bridger, JM.   (2010)   'Association of adipogenic genes with SC-35 domains during porcine adipogenesis'. Chromosome Research: the international journal for all aspects of chromosome and nuclear biology, 18 (8).  pp. 887 - 895. doi: 10.1007/s10577-010-9176-1 

Veeramalai, M. , Gilbert, D.  and Valiente, G.   (2010)   'An optimized TOPS plus comparison method for enhanced TOPS models'. BMC Bioinformatics, 11 doi: 10.1186/1471-2105-11-138 Download publication 

Gilbert, D. , Heiner, M. , Breitling, R.  and Orton, R.   (2010)   'Computational modelling of kinase signalling cascades'. Methods in Molecular Biology, 661 pp. 369 - 384. doi: 10.1007/978-1-60761-795-2_22 

Gu, X. , Trybilo, M. , Ramsey, S. , Jensen, M. , et al.   (2010)   'Engineering a novel self-powering electrochemical biosensor'. Systems and Synthetic Biology, 4 (3).  pp. 203 - 214. doi: 10.1007/s11693-010-9063-2 Download publication 

Sturm, OE. , Orton, R. , Grindlay, J. , Birtwistle, M. , et al.   (2010)   'The mammalian MAPK/ERK pathway exhibits properties of a negative feedback amplifier.'. Science Signaling, 3 (153).  pp. ra90. doi: 10.1126/scisignal.2001212 

Anvar, SY. , 't Hoen, PA.  and Tucker, A.   (2010)   'The identification of informative genes from multiple datasets with increasing complexity'. BMC Bioinformatics, 11 pp. 32 - 32. doi: 10.1186/1471-2105-11-32 Download publication 

Tucker, A.  and Garway-Heath, D.   (2010)   'The pseudotemporal bootstrap for predicting glaucoma from cross-sectional visual field data.'. IEEE Trans Inf Technol Biomed, 14 (1).  pp. 79 - 85. doi: 10.1109/TITB.2009.2023319 Download publication 

Ren, J. , Sainsbury, S. , Nettleship, JE. , Saunders, NJ.  and Owens, RJ.   (2010)   'The crystal structure of NGO0477 from Neisseria gonorrhoeae reveals a novel protein fold incorporating a helix-turn-helix motif'. Proteins: Structure, Function, and Bioinformatics, 78 (7).  pp. 1798 - 1802. doi: 10.1002/prot.22698 

Malhas, A. , Saunders, NJ.  and Vaux, DJ.   (2010)   'The nuclear envelope can control gene expression and cell cycle progression via miRNA regulation'. Cell Cycle, 9 (3).  pp. 531 - 539. doi: 10.4161/cc.9.3.10511 Download publication 

Sainsbury, S. , Ren, J. , Nettleship, JE. , Saunders, NJ. , et al.   (2010)   'The structure of a reduced form of OxyR from Neisseria meningitidis'. BMC Structural Biology, 10 doi: 10.1186/1472-6807-10-10 Download publication 

Farquhar, CA. , Paterson, AM. , Cobbold, SP. , Rueda, HG. , et al.   (2010)   'Tolerogenicity is not an absolute property of a dendritic cell'. European Journal of Immunology, 40 (6).  pp. 1728 - 1737. doi: 10.1002/eji.200939974 

Grzmil, M. , Rzymski, T. , Milani, M. , Harris, AL. , et al.   (2010)   'An oncogenic role of eIF3e/INT6 in human breast cancer'. Oncogene, 29 (28).  pp. 4080 - 4089. doi: 10.1038/onc.2010.152 

Ballabio, E. , Mitchell, T. , van Kester, MS. , Taylor, S. , et al.   (2010)   'MicroRNA expression in Sezary syndrome: identification, function, and diagnostic potential'. Blood, 116 (7).  pp. 1105 - 1113. doi: 10.1182/blood-2009-12-256719 

Gilbert, D. , Jaramillo, A. , Krasnogor, N.  and de Lorenzo, V.   (2010)   'Editorial: Synthetic biology gains momentum in Europe'. Systems and Synthetic Biology, 4 (3).  pp. 145 - 147. doi: 10.1007/s11693-010-9065-0 

Hala, DN. , Van Look, K. , Holt, WV.  and Jobling, S.   (2009)   'Validation of a method for measuring sperm quality and quantity in reproductive toxicity tests with pair-breeding male fathead minnows (Pimephales promelas)'. ILAR Journal, 50 (4).  pp. E1 - E10. 

Owen, SF. , Huggett, DB. , Hutchinson, TH. , Hetheridge, MJ. , et al.   (2009)   'Uptake of propranolol, a cardiovascular pharmaceutical, from water into fish plasma and its effects on growth and organ biometry'. Aquatic Toxicology, 93 (4).  pp. 217 - 224. doi: 10.1016/j.aquatox.2009.05.009 

Al Sarakbi, W. , Sasi, W. , Jiang, WG. , Roberts, T. , et al.   (2009)   'The mRNA expression of SETD2 in human breast cancer: correlation with clinico-pathological parameters'. BMC Cancer, 9 doi: 10.1186/1471-2407-9-290 Download publication 

Patani, N. , Jiang, W. , Mansel, R. , Newbold, R.  and Mokbel, K.   (2009)   'The mRNA expression of SATB1 and SATB2 in human breast cancer'. Cancer Cell International, 9 doi: 10.1186/1475-2867-9-18 Download publication 

Harris, CA. , Brian, JV. , Pojana, G. , Lamoree, M. , et al.   (2009)   'The influence of a surfactant, linear alkylbenzene sulfonate, on the estrogenic response to a mixture of (xeno)estrogens in vitro and in vivo'. Aquatic Toxicology, 91 (1).  pp. 95 - 98. doi: 10.1016/j.aquatox.2008.09.014 Download publication 

Johnson, AC. , Acreman, MC. , Dunbar, MJ. , Feist, SW. , et al.   (2009)   'The British river of the future: how climate change and human activity might affect two contrasting river ecosystems in England'. Science of The Total Environment, 407 (17).  pp. 4787 - 4798. doi: 10.1016/j.scitotenv.2009.05.018 

King, RD. , Rowland, J. , Oliver, SG. , Young, M. , et al.   (2009)   'The Automation of Science'. Science, 324 (5923).  pp. 85 - 89. doi: 10.1126/science.1165620 

Yang, F.  and Li, Y.   (2009)   'Set-membership filtering with state constraints'. IEEE Transactions on Aerospace and Electronic Systems, 45 (4).  pp. 1619 - 1629. doi: 10.1109/TAES.2009.5310323 

Yang, F.  and Li, Y.   (2009)   'Set-membership filtering for systems with sensor saturation'. Automatica, 45 (8).  pp. 1896 - 1902. doi: 10.1016/j.automatica.2009.04.011 

Yang, F.  and Li, Y.   (2009)   'Set-membership filtering for discrete-time systems with nonlinear equality constraints'. IEEE Transactions on Automatic Control, 54 (10).  pp. 2480 - 2486. doi: 10.1109/TAC.2009.2029403 

Guy, CP. , Atkinson, J. , Gupta, MK. , Mahdi, AA. , et al.   (2009)   'Rep Provides a Second Motor at the Replisome to Promote Duplication of Protein-Bound DNA'. Molecular Cell, 36 (4).  pp. 654 - 666. doi: 10.1016/j.molcel.2009.11.009 

Sumpter, JP.   (2009)   'Protecting aquatic organisms from chemicals: the harsh realities'. Philosophical Transactions of the Royal Society A, 367 (1904).  pp. 3877 - 3894. doi: 10.1098/rsta.2009.0106 

Grosan, C.  and Abraham, A.   (2009)   'On a class of global optimization test functions'. Neural Network World, 19 (2).  pp. 247 - 252. 

Lake, A. , Shield, LA. , Cordano, P. , Chui, DT. , et al.   (2009)   'Mutations of NFKBA, encoding IkappaBalpha, are a recurrent finding in classical Hodgkin lymphoma but are not a unifying feature of non-EBV-associated cases'. Anticancer Research: international journal of cancer research and treatment, 125 (6).  pp. 1334 - 1342. doi: 10.1002/ijc.24502 Download publication 

The OBI Consortium.   (2009)   'Modeling of biomedical experimental processes with OBI'. J. of Biomed. Semantics, 1 

Brian, JV. , Beresford, N. , Walker, J. , Pojana, G. , et al.   (2009)   'Hypoxia does not influence the response of fish to a mixture of estrogenic chemicals'. Environmental Science and Technology, 43 (1).  pp. 214 - 218. doi: 10.1021/es801999t Download publication 

OLTEAN, MIHAI. , GROŞAN, CRINA. , DIOŞAN, LAURA.  and MIHĂILĂ, CRISTINA.   (2009)   'GENETIC PROGRAMMING WITH LINEAR REPRESENTATION: A SURVEY'. International Journal on Artificial Intelligence Tools, 18 (02).  pp. 197 - 238. doi: 10.1142/S0218213009000111 

Ly, DQ. , Paramonov, L.  and Makatsoris, C.   (2009)   'First principles studies of an Si tip on an Si(100)2 x 1 reconstructed surface'. Journal of Physics: Condensed Matter, 21 (18).  pp. . doi: 10.1088/0953-8984/21/18/185006 Download publication 

Mustafee, N. , Taylor, SJE. , Katsaliaki, K.  and Brailsford, S.   (2009)   'Facilitating the analysis of a UK national blood service supply chain using distributed simulation'. Simulation, 85 (2).  pp. 113 - 128. doi: 10.1177/0037549708100530 Download publication 

Clarke, N. , Routledge, EJ. , Garner, A. , Casey, D. , et al.   (2009)   'Exposure to treated sewage effluent disrupts reproduction and development in the seasonally breeding ramshorn snail (subclass: Pulmonata, Planorbarius corneus)'. Environmental Science and Technology, 43 (6).  pp. 2092 - 2098. doi: 10.1021/es8020167 Download publication 

Hannah, R. , D'Aco, VJ. , Anderson, PD. , Buzby, ME. , et al.   (2009)   'Exposure assessment of 17α-ethinylestradiol in surface waters of the Uniter States and Europe'. Environmental Toxicology and Chemistry, 28 (12).  pp. 2725 - 2732. doi: 10.1897/08-622.1 

Ballabio, E. , Cantarella, CD. , Federico, C. , Di Mare, P. , et al.   (2009)   'Ectopic expression of the HLXB9 gene is associated with an altered nuclear position in t(7;12) leukaemias'. Leukemia, 23 pp. 1179 - 1182. doi: 10.1038/leu.2009.15 Download publication 

Jürgens, MD. , Johnson, AC. , Pottinger, TG.  and Sumpter, JP.   (2009)   'Do suspended sediments modulate the effects of octylphenol on rainbow trout?'. Water Research, 43 (5).  pp. 1381 - 1391. doi: 10.1016/j.watres.2008.12.010 

Loizidou, MA. , Michael, T. , Neuhausen, SL. , Newbold, RF. , et al.   (2009)   'DNA-repair genetic polymorphisms and risk of breast cancer in Cyprus'. Breast Cancer Research and Treatment, 115 (3).  pp. 623 - 627. doi: 10.1007/s10549-008-0084-4 Download publication 

Grosan, C. , Abraham, A.  and Hassainen, AE.   (2009)   'Designing resilient networks using multicriteria metaheuristics'. Telecommunication systems, 40 (1-2).  pp. 75 - 88. 

Katsaliaki, K. , Mustafee, N. , Taylor, SJE.  and Brailsford, S.   (2009)   'Comparing conventional and distributed approaches to simulation in a complex supply-chain health system'. Journal of the Operational Research Society, 60 (1).  pp. 43 - 51. doi: 10.1057/palgrave.jors.2602531 Download publication 

Giltrow, E. , Eccles, PD. , Winter, MJ. , McCormack, PJ. , et al.   (2009)   'Chronic effects assessment and plasma concentrations of the β-blocker propranolol in fathead minnows (Pimephales promelas)'. Aquatic Toxicology, 95 (3).  pp. 195 - 202. doi: 10.1016/j.aquatox.2009.09.002 Download publication 

Peek, N. , Combi, C.  and Tucker, A.   (2009)   'Biomedical data mining (Editorial)'. Methods of Information in Medicine, 48 (3).  pp. 225 - 228. 

Sofra, V. , Mansour, S. , Liu, M. , Gao, B. , et al.   (2009)   'Antigen-loaded ER microsomes from APC induce potent immune responses against viral infection'. European Journal of Immunology, 39 (1).  pp. 85 - 95. doi: 10.1002/eji.200838443 

Yang, F. , Wang, W.  and Li, Y.   (2009)   'An iterative LMI approach to h-infinity networked control with random communication delays'. International Journal of Systems, Control and Communications, 1 (3).  pp. 325 - 341. doi: 10.1504/IJSCC.2009.024559 

Makatsoris, C.   (2009)   'An information and communication technologies-based framework for enhancing project management education through competence assessment and development'. Human Factors and Ergonomics in Manufacturing and Service Industries, 19 (6).  pp. 544 - 567. doi: 10.1002/hfm.20183 Download publication 

Hassanien, AE. , Abraham, A.  and Grosan, C.   (2009)   'Spiking neural network and wavelets for hiding iris data in digital images'. Soft Computing: A Fusion of Foundations, Methodologies and Applications, 13 (4).  pp. 401 - 416. doi: 10.1007/s00500-008-0324-x 

Chen, ZX. , Yang, B. , Chen, YH. , Wang, L. , et al.   (2009)   'Improving neural network classification using Further Division of Recognition Space'. International Journal of Innovative Computing, Information and Control, 5 (2).  pp. 301 - 310. 

Myers, JP. , vom Saal, FS. , Akingbemi, BT. , Arizono, K. , et al.   (2009)   'Why public health agencies cannot depend on good laboratory practices as a criterion for selecting data: The case of Bisphenol A'. Environmental Health Perspectives, 117 (3).  pp. 309 - 315. doi: 10.1289/ehp.0800173 Download publication 

Chen, ZX. , Yang, B. , Chen, YH. , Abraham, A. , et al.   (2009)   'Online hybrid traffic classifier for Peer-to-Peer systems based on network processors'. Applied Soft Computing, 9 (2).  pp. 685 - 694. doi: 10.1016/j.asoc.2008.09.010 

Dafou, D. , Ramus, SJ. , Choi, K. , Grun, B. , et al.   (2009)   'Chromosomes 6 and 18 induce neoplastic suppression in epithelial ovarian cancer cells'. International Journal of Cancer, 124 (5).  pp. 1037 - 1044. doi: 10.1002/ijc.24058 Download publication 

Grosan, C.  and Abraham, A.   (2009)   'A novel global optimization technique for high dimensional functions'. International Journal of Intelligent Systems, 24 (4).  pp. 421 - 440. doi: 10.1002/int.20343 

Wu, Z. , Ma, X. , Brett, PN.  and Xu, J.   (2009)   'Vibration analysis of submerged rectangular microplates with distributed mass loading'. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 465 (2104).  pp. 1323 - 1336. doi: 10.1098/rspa.2008.0447 

Jobling, S. , Burn, RW. , Thorpe, K. , Williams, R.  and Tyler, C.   (2009)   'Statistical modeling suggests that antiandrogens in effluents from wastewater treatment works contribute to widespread sexual disruption in fish living in English rivers'. Environmental Health Perspectives, 117 (5).  pp. 797 - 802. doi: 10.1289/ehp.0800197 Download publication 

Odoemelam, E. , Raghavan, N. , Miller, A. , Bridger, JM.  and Knight, M.   (2009)   'Revised karyotyping and gene mapping of the Biomphalaria glabrata embryonic (Bge) cell line'. International Journal for Parasitology, 39 (6).  pp. 675 - 681. doi: 10.1016/j.ijpara.2008.11.011 Download publication 

Wang, Z. , Liu, X. , Liu, Y. , Liang, J.  and Vinciotti, V.   (2009)   'An extended Kalman filtering approach to modeling nonlinear dynamic gene regulatory networks via short gene expression time series'. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (3).  pp. 410 - 419. doi: 10.1109/TCBB.2009.5 Download publication 

Elliott, MT. , Ma, X.  and Brett, PN.   (2009)   'A smart sensing platform for the classification of ambulatory patterns'. Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine, 223 (5).  pp. 567 - 575. doi: 10.1243/09544119JEIM523 

King, RD. , Rowland, J. , Aubrey, W. , Liakata, M. , et al.   (2009)   'The robot scientist adam'. Computer, 42 (8).  pp. 46 - 54. doi: 10.1109/MC.2009.270 

Wei, GL. , Wang, Z. , Lam, J. , Fraser, K. , et al.   (2009)   'Robust filtering for stochastic genetic regulatory networks with time-varying delay'. Mathematical Biosciences, 220 (2).  pp. 73 - 80. doi: 10.1016/j.mbs.2009.04.002 Download publication 

Rudolph, CJ. , Upton, AL. , Harris, L.  and Lloyd, RG.   (2009)   'Pathological replication in cells lacking RecG DNA translocase'. Molecular Microbiology, 73 (3).  pp. 352 - 366. doi: 10.1111/j.1365-2958.2009.06773.x Download publication 

Harvey, AJ. , Pennington, CJ. , Porter, S. , Burmi, RS. , et al.   (2009)   'Brk protects breast cancer cells from autophagic cell death induced by loss of anchorage'. American Journal of Pathology, 175 (3).  pp. 1226 - 1234. doi: 10.2353/ajpath.2009.080811 Download publication 

Szczerbal, I. , Foster, HA.  and Bridger, JM.   (2009)   'The spatial repositioning of adipogenesis genes is correlated with their expression status in a porcine mesenchymal stem cell adipogenesis model system'. Chromosoma: biology of the nucleus, 118 (5).  pp. 647 - 663. doi: 10.1007/s00412-009-0225-5 

Howie, D. , Nolan, KF. , Daley, S. , Butterfield, E. , et al.   (2009)   'MS4A4B is a GITR-associated membrane adapter, expressed by regulatory T cells, which modulates T cell activation'. Journal of Immunology, 183 (7).  pp. 4197 - 4204. doi: 10.4049/jimmunol.0901070 

Rudolph, CJ. , Upton, AL.  and Lloyd, RG.   (2009)   'Replication fork collisions cause pathological chromosomal amplification in cells lacking RecG DNA translocase'. Molecular Microbiology, 74 (4).  pp. 940 - 955. doi: 10.1111/j.1365-2958.2009.06909.x Download publication 

Orton, RJ. , Adriaens, ME. , Gormand, A. , Sturm, OE. , et al.   (2009)   'Computational modelling of cancerous mutations in the EGFR/ERK signalling pathway'. BMC Systems Biology, 3 pp. 100. doi: 10.1186/1752-0509-3-100 Download publication 

Torrance, GM. , Leader, DP. , Gilbert, DR.  and Milner-White, EJ.   (2009)   'A novel main chain motif in proteins bridged by cationic groups: the niche'. Journal of Molecular Biology, 385 (4).  pp. 1076 - 1086. doi: 10.1016/j.jmb.2008.11.007 

von Kriegsheim, A. , Baiocchi, D. , Birtwistle, M. , Sumpton, D. , et al.   (2009)   'Cell fate decisions are specified by the dynamic ERK interactome'. Nature Cell Biology, 11 (12).  pp. 1458 - 1464. doi: 10.1038/ncb1994 

Park, SH. , Reyes, JA. , Gilbert, DR. , Kim, JW.  and Kim, S.   (2009)   'Prediction of protein-protein interaction types using association rule based classification'. BMC Bioinformatics, 10 doi: 10.1186/1471-2105-10-36 Download publication 

Steele, E. , Tucker, A. , 't Hoen, PAC.  and Schuemie, MJ.   (2009)   'Literature-based priors for gene regulatory networks'. Bioinformatics, 25 (14).  pp. 1768 - 1774. doi: 10.1093/bioinformatics/btp277 Download publication 

Planes, FJ.  and Beasley, JE.   (2009)   'Path finding approaches and metabolic pathways'. Discrete Applied Mathematics, 157 (10).  pp. 2244 - 2256. doi: 10.1016/j.dam.2008.06.035 

Planes, FJ.  and Beasley, JE.   (2009)   'An optimization model for metabolic pathways'. Bioinformatics, 25 (20).  pp. 2723 - 2729. doi: 10.1093/bioinformatics/btp441 Download publication 

de Figueiredo, LF. , Podhorski, A. , Rubio, A. , Kaleta, C. , et al.   (2009)   'Computing the shortest elementary flux modes in genome-scale metabolic networks'. Bioinformatics, 25 (23).  pp. 3158 - 3165. doi: 10.1093/bioinformatics/btp564 Download publication 

Nichols, CE. , Sainsbury, S. , Ren, J. , Walter, TS. , et al.   (2009)   'The structure of NMB1585, a MarR-family regulator from Neisseria meningitidis'. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 65 (Pt 3).  pp. 204 - 209. doi: 10.1107/S174430910900414X Download publication 

Waters, MT. , Wang, P. , Korkaric, M. , Capper, RG. , et al.   (2009)   'GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis'. The Plant Cell, 21 (4).  pp. 1109 - 1128. doi: 10.1105/tpc.108.065250 Download publication 

Jordan, PW.  and Saunders, NJ.   (2009)   'Host iron binding proteins acting as niche indicators for Neisseria meningitidis'. PLoS One, 4 (4).  doi: 10.1371/journal.pone.0005198 Download publication 

Okamoto, H. , Göbel, C. , Capper, RG. , Saunders, N. , et al.   (2009)   'The α-subunit of the heterotrimeric G-protein affects jasmonate responses in Arabidopsis thaliana'. Journal of Experimental Botany, 60 (7).  pp. 1991 - 2003. doi: 10.1093/jxb/erp060 

Gamba, P. , Veening, JW. , Saunders, NJ. , Hamoen, LW.  and Daniel, RA.   (2009)   'Two-step assembly dynamics of the Bacillus subtilis divisome'. Journal of Bacteriology, 191 (13).  pp. 4186 - 4194. doi: 10.1128/JB.01758-08 

Lawrie, CH. , Chi, J. , Taylor, S. , Tramonti, D. , et al.   (2009)   'Expression of microRNAs in diffuse large B cell lymphoma is associated with immunophenotype, survival and transformation from follicular lymphoma'. Journal of Cellular and Molecular Medicine, 13 (7).  pp. 1248 - 1260. doi: 10.1111/j.1582-4934.2008.00628.x 

Yao, Y. , Zhao, Y. , Smith, LP. , Lawrie, CH. , et al.   (2009)   'Differential expression of microRNAs in Marek's disease virus-transformed T-lymphoma cell lines'. Journal of General Virology, 90 (Pt 7).  pp. 1551 - 1559. doi: 10.1099/vir.0.009902-0 

Sainsbury, S. , Lane, LA. , Ren, J. , Gilbert, RJ. , et al.   (2009)   'The structure of CrgA from Neisseria meningitidis reveals a new octameric assembly state for LysR transcriptional regulators'. Nucleic Acids Research, 37 (14).  pp. 4545 - 4558. doi: 10.1093/nar/gkp445 Download publication 

Howie, D. , Nolan, KF. , Daley, S. , Butterfield, E. , et al.   (2009)   'MS4A4B is a GITR-associated membrane adapter, expressed by regulatory T cells, which modulates T cell activation'. Journal of Immunology, 183 (7).  pp. 4197 - 4204. doi: 10.4049/​jimmunol.0901070 

Beard, GS. , Bridger, JM. , Kill, IR.  and Tree, DR.   (2008)   'Towards a Drosophila model of Hutchinson-Gilford progeria syndrome'. Biochemical Society Transactions, 36 (Part 6).  pp. 1389 - 1392. doi: 10.1042/BST0361389 

Federico, C. , Cantarella, CD. , Di Mare, P. , Tosi, S.  and Saccone, S.   (2008)   'The radial arrangement of the human chromosome 7 in the lymphocyte nucleus is associated with chromosomal band gene density'. Chromosoma: Biology of the Nucleus, 117 (4).  pp. 399 - 410. doi: 10.1007/s00412-008-0160-x Download publication 

Salhab, M. , Jiang, WG. , Newbold, RF.  and Mokbel, K.   (2008)   'The expression of gene transcripts of telomere-associated genes in human breast cancer: correlation with clinico-pathological parameters and clinical outcome'. Breast Cancer Research and Treatment, 109 (1).  pp. 35 - 46. doi: 10.1007/s10549-007-9622-8 Download publication 

Soldatova, L. , King, RD. , Aubrey, W.  and Clare, A.   (2008)   'The EXACT description of biomedical protocols'. Bioinformatics, 24 (13).  pp. i295 - i303. doi: 10.1093/bioinformatics/btn156 Download publication 

Sumpter, JP.   (2008)   'The ecotoxicology of hormonally active micropollutants'. Water Science and Technology, 57 (1).  pp. 125 - 130. doi: 10.2166/wst.2008.796 

Wang, Z. , Yang, F. , Ho, DWC. , Swift, S. , et al.   (2008)   'Stochastic dynamic modelling of short gene expression time series data'. IEEE Transactions on Nanobioscience, 7 (1).  pp. 44 - 55. doi: 10.1109/TNB.2008.2000149 Download publication 

Tyler, CR.  and Jobling, S.   (2008)   'Roach, sex, and gender-bending chemicals: the feminization of wild fish in English rivers'. BioScience, 58 (11).  pp. 1051 - 1059. doi: 10.1641/B581108 

Sumpter, JP.  and Johnson, AC.   (2008)   'Reflections on endocrine disruption in the aquatic environment: from known knowns to unknown unknowns (and many things in between)'. Journal of Environmental Monitoring, 10 (12).  pp. 1476 - 1485. doi: 10.1039/b815741n 

Meaburn, KJ. , Newbold, RF.  and Bridger, JM.   (2008)   'Positioning of human chromosomes in murine cell hybrids according to synteny'. Chromosoma, 117 (6).  pp. 579 - 591. doi: 10.1007/s00412-008-0175-3 Download publication 

Mehta, IS. , Elcock, LS. , Amira, M. , Kill, IR.  and Bridger, JM.   (2008)   'Nuclear motors and nuclear structures containing A-type lamins and emerin: is there a functional link?'. Biochemical Society Transactions, 36 (Part 6).  pp. 1384 - 1388. doi: 10.1042/BST0361384 

Sugiana, C. , Pagliarini, DJ. , McKenzie, M. , Kirby, DM. , et al.   (2008)   'Mutation of C20orf7 disrupts complex I assembly and causes lethal neonatal mitochondrial disease'. The American Journal of Human Genetics, 83 (4).  pp. 468 - 478. doi: 10.1016/j.ajhg.2008.09.009 Download publication 

Jourdan, F. , Breitling, R. , Barrett, MP.  and Gilbert, D.   (2008)   'MetaNetter: inference and visualization of high-resolution metabolomic networks'. Bioinformatics, 24 (1).  pp. 143 - 145. doi: 10.1093/bioinformatics/btm536 

Gabriel, FLP. , Routledge, EJ. , Heidlberger, A. , Rentsch, D. , et al.   (2008)   'Isomer-specific degradation and endocrine disrupting activity of nonylphenols'. Environmental Science and Technology, 42 (17).  pp. 6399 - 6408. doi: 10.1021/es800577a 

He, X. , Bridger, JM.  and Kill, IR.   (2008)   'Hutchinson-Gilford progeria syndrome: Too old, too soon'. Biochemist, 30 (5).  pp. 18 - 22. 

Hauer, J. , Tosi, S. , Schuster, FR. , Harbott, J. , et al.   (2008)   'Graft versus leukaemia effect after haploidentical HSCT in a MLL-negative infant AML with HLXB9/ETV6 rearrangement'. Pediatr Blood Cancer, 50 pp. 921 - 923. 

Loizidou, MA. , Michael, T. , Neuhausen, SL. , Newbold, RF. , et al.   (2008)   'Genetic polymorphisms in the DNA repair genes XRCC1, XRCC2 and XRCC3 and risk of breast cancer in Cyprus'. Breast Cancer Research and Treatment, 112 (3).  pp. 575 - 579. doi: 10.1007/s10549-007-9881-4 Download publication 

Coelho, D. , Suormala, T. , Stucki, M. , Lerner-Ellis, JP. , et al.   (2008)   'Gene identification for the cblD defect of vitamin B12 metabolism'. New England Journal of Medicine, 358 (14).  pp. 1454 - 1464. doi: 10.1056/NEJMoa072200 Download publication 

Volpi, EV.  and Bridger, JM.   (2008)   'FISH glossary: an overview of the fluorescence in situ hybridization technique'. BioTechniques, 45 (4).  pp. 385 - 409. doi: 10.2144/000112811 

Elcock, LS.  and Bridger, JM.   (2008)   'Exploring the effects of a dysfunctional nuclear matrix'. Biochemical Society Transactions, 36 (Part 6).  pp. 1378 - 1383. doi: 10.1042/BST0361378 

Worku, D. , Jouhra, F. , Jiang, GW. , Patani, N. , et al.   (2008)   'Evidence of a tumour suppressive function of E2F1 gene in human breast cancer'. Anticancer Research, 28 (4B).  pp. 2135 - 2139. Download publication 

Althaus, FR. , Hungerbühler, K. , Jobling, S. , Ruegg, U. , et al.   (2008)   'Endocrine disruptors: relevance to humans, animals and ecosystems research highlights from the National Research Programme NRP50'. CHIMIA International Journal for Chemistry, 62 (5).  pp. 316 - 317. doi: 10.2533/chimia.2008.316 

Johnson, AC. , Jürgens, MD. , Williams, RJ. , Kümmerer, K. , et al.   (2008)   'Do cytotoxic chemotherapy drugs discharged into rivers pose a risk to the environment and human health? An overview and UK case study'. Journal of Hydrology, 348 (1-2).  pp. 167 - 175. doi: 10.1016/j.jhydrol.2007.09.054 

Khalid, S. , Grazio, D. , Wang, P. , Liu, X.  and Li, S.   (2008)   'Designing customised gene expression arrays based on specific biological questions or functions'. Journal of Integrated Design & Process Science, 11 (3).  pp. 67 - 81. 

Caldwell, DJ. , Mastrocco, F. , Hutchinson, TH. , Lange, R. , et al.   (2008)   'Derivation of an aquatic predicted no-effect concentration for the synthetic hormone, 17α-ethinyl estradiol'. Environmental Science and Technology, 42 (19).  pp. 7046 - 7054. doi: 10.1021/es800633q 

Winter, MJ. , Lillicrap, AD. , Caunter, JE. , Schaffner, C. , et al.   (2008)   'Defining the chronic impacts of atenolol on embryo-larval development and reproduction in the fathead minnow (Pimephales promelas)'. Aquatic Toxicology, 86 (3).  pp. 361 - 369. doi: 10.1016/j.aquatox.2007.11.017 

Orton, RJ. , Sturm, OE. , Gormand, A. , Kolch, W.  and Gilbert, DR.   (2008)   'Computational modelling reveals feedback redundancy within the epidermal growth factor receptor/extracellular-signal regulated kinase signalling pathway'. IET Systems Biology, 2 (4).  pp. 173 - 183. doi: 10.1049/iet-syb:20070066 

Khanin, R.  and Vinciotti, V.   (2008)   'Computational modeling of post-transcriptional gene regulation by microRNAs.'. Journal of Computational Biology, 15 (3).  pp. 305 - 316. doi: 10.1089/cmb.2007.0184 

Recchia, A. , Wit, E. , Vinciotti, V.  and Kellam, P.   (2008)   'Computational inference of replication and transcription activator regulator activity in herpesvirus from gene expression data'. IET Systems Biology, 2 (6).  pp. 385 - 396. doi: 10.1049/iet-syb:20070053 

Oehm, S. , Gilbert, D. , Tauch, A. , Stoye, J.  and Goesmann, A.   (2008)   'Comparative Pathway Analyzer - A web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms'. Nucleic Acids Research, 36 pp. W433 - W437. doi: 10.1093/nar/gkn284 Download publication 

Ma, X. , Tongpadungrod, P.  and Brett, PN.   (2008)   'Automated tactile sensory perception of contact using the distributive approach'. . pp. 219 - 228. doi: 10.1007/978-3-540-74027-8_18 

Johnson, AC. , Ternes, T. , Williams, RJ.  and Sumpter, JP.   (2008)   'Assessing the concentrations of polar organic microcontaminants from point sources in the aquatic environment: measure or model?'. Environmental Science and Technology, 42 (15).  pp. 5390 - 5399. doi: 10.1021/es703091r 

Brett, PN. , Taylor, RP. , Proops, D.  and Griffiths, MV.   (2008)   'An autonomous surgical robot applied in practice'. . pp. 261 - 266. doi: 10.1007/978-3-540-74027-8_22 

Al-Mahdawi, S. , Pinto, RM. , Ismail, O. , Varshney, D. , et al.   (2008)   'The Friedreich ataxia GAA repeat expansion mutation induces comparable epigenetic changes in human and transgenic mouse brain and heart tissues'. Human Molecular Genetics, 17 (5).  pp. 735 - 746. doi: 10.1093/hmg/ddm346 Download publication 

Grosan, C.  and Abraham, A.   (2008)   'A new approach for solving nonlinear equations systems'. IEEE Transactions on Systems, Man, and Cybernetics Part A:Systems and Humans, 38 (3).  pp. 698 - 714. doi: 10.1109/TSMCA.2008.918599 

Khalid, S. , Khan, M. , Gorle, CB. , Fraser, K. , et al.   (2008)   'MaXlab: A novel application for the cross comparison and integration of biological signatures from microarray studies'. In Silico Biology, 8 (3-4).  pp. 363 - 376. 

Coulson, CJ. , Taylor, RP. , Reid, AP. , Griffiths, MV. , et al.   (2008)   'An autonomous surgical robot for drilling a cochleostomy: Preliminary porcine trial'. Clinical Otolaryngology, 33 (4).  pp. 343 - 347. doi: 10.1111/j.1749-4486.2008.01703.x 

Grosan, C.  and Abraham, A.   (2008)   'Multiple solutions for a system of nonlinear equations'. International Journal of Innovative Computing, Information and Control, 4 (9).  pp. 2161 - 2170. 

Rudolph, CJ. , Upton, AL.  and Lloyd, RG.   (2008)   'Maintaining replication fork integrity in UV-irradiated Escherichia coli cells'. DNA Repair, 7 (9).  pp. 1589 - 1602. doi: 10.1016/j.dnarep.2008.06.012 

Zhu, B. , Symonds, AL. , Martin, JE. , Kioussis, D. , et al.   (2008)   'Early growth response gene 2 (Egr-2) controls the self-tolerance of T cells and prevents the development of lupuslike autoimmune disease'. J Exp Med, 205 (10).  pp. 2295 - 2307. doi: 10.1084/jem.20080187 Download publication 

Chen, X. , Tang, T-S. , Tu, H. , Nelson, O. , et al.   (2008)   'Deranged calcium signaling and neurodegeneration in spinocerebellar ataxia type 3'. The Journal of Neuroscience, 28 (48).  pp. 12713 - 12724. doi: 10.1523/JNEUROSCI.3909-08.2008 Download publication 

Fraser, K. , Wang, Z. , Li, Y. , Kellam, P.  and Liu, X.   (2008)   'Can graph-cutting improve microarray gene expression reconstructions?'. Pattern Recognition Letters, 29 (16).  pp. 2129 - 2136. doi: 10.1016/j.patrec.2008.07.011 Download publication 

Yang, F. , Li, Y.  and Liu, X.   (2008)   'Robust error square constrained filter design for systems with non-gaussian noises'. IEEE Signal Processing Letters, 15 pp. 930 - 933. doi: 10.1109/LSP.2008.2005443 

Veeramalai, M.  and Gilbert, D.   (2008)   'A novel method for comparing topological models of protein structures enhanced with ligand information'. Bioinformatics, 24 (23).  pp. 2698 - 2705. doi: 10.1093/bioinformatics/btn518 Download publication 

Breitling, R. , Gilbert, D. , Heiner, M.  and Orton, R.   (2008)   'A structured approach for the engineering of biochemical network models, illustrated for signalling pathways'. Briefings in Bioinformatics, 9 (5).  pp. 404 - 421. doi: 10.1093/bib/bbn026 Download publication 

Steele, E.  and Tucker, A.   (2008)   'Consensus and meta-analysis regulatory networks for combining multiple microarray gene expression datasets'. Journal of Biomedical Informatics, 41 (6).  pp. 914 - 926. doi: 10.1016/j.jbi.2008.01.011 Download publication 

Planes, FJ.  and Beasley, JE.   (2008)   'A critical examination of stoichiometric and path-finding approaches to metabolic pathways'. Briefings in Bioinformatics, 9 (5).  pp. 422 - 436. doi: 10.1093/bib/bbn018 

Harper, KN. , Ocampo, PS. , Steiner, BM. , George, RW. , et al.   (2008)   'On the origin of trepanomatoses: A phylogenetic approach'. PLoS Neglected Tropical Diseases, 2 (1).  doi: 10.1371/journal.pntd.0000148 Download publication 

Lawrie, CH. , Saunders, NJ. , Soneji, S. , Palazzo, S. , et al.   (2008)   'MicroRNA expression in lymphocyte development and malignancy'. Leukemia, 22 pp. 1440 - 1446. doi: 10.1038/sj.leu.2405083 Download publication 

Ren, J. , Nettleship, JE. , Sainsbury, S. , Saunders, NJ.  and Owens, RJ.   (2008)   'Structure of the cold-shock domain protein from Neisseria meningitidis reveals a strand-exchanged dimer'. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 64 (Pt 4).  pp. 247 - 251. doi: 10.1107/S1744309108005411 Download publication 

Sainsbury, S. , Ren, J. , Saunders, NJ. , Stuart, DI.  and Owens, RJ.   (2008)   'Crystallization and preliminary X-ray analysis of CrgA, a LysR-type transcriptional regulator from pathogenic Neisseria meningitidis MC58'. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 64 (Pt 9).  pp. 797 - 801. doi: 10.1107/S1744309108024068 Download publication 

Grosan, C. , Abraham, A.  and Tigan, S.   (2008)   'Multicriteria programming in medical diagnosis and treatments'. Applied Soft Computing, 8 (4).  pp. 1407 - 1417. doi: 10.1016/j.asoc.2007.10.014 

Rudolph, CJ. , Dhillon, P. , Moore, T.  and Lloyd, RG.   (2007)   'Avoiding and resolving conflicts between DNA replication and transcription'. DNA Repair, 6 (7).  pp. 981 - 993. doi: 10.1016/j.dnarep.2007.02.017 

Beasley, JE.  and Planes, FJ.   (2007)   'Recovering metabolic pathways via optimization'. Bioinformatics, 23 (1).  pp. 92 - 98. doi: 10.1093/bioinformatics/btl554 

Whitehead, RN. , Overton, TW. , Snyder, LAS. , McGowan, SJ. , et al.   (2007)   'The small FNR regulon of Neisseria gonorrhoeae: Comparison with the larger E. coli FNR regulon and interaction with the NarQ-NarP regulon'. BMC Genomics, 8 doi: 10.1186/1471-2164-8-35 Download publication 

Bentley, SD. , Vernikos, GS. , Snyder, LAS. , Churcher, C. , et al.   (2007)   'Meningococcal genetic variation mechanisms viewed through comparative analysis of Serogroup C strain FAM18'. PLoS Genetics, 3 (2).  doi: 10.1371/journal.pgen.0030023 Download publication 

Malhas, A. , Lee, CF. , Sanders, R. , Saunders, NJ.  and Vaux, DJ.   (2007)   'Defects in lamin B1 expression or processing affect interphase chromosome position and gene expression'. The Journal of Cell Biology, 176 (5).  pp. 593 - 603. doi: 10.1083/jcb.200607054 Download publication 

Ren, J. , Sainsbury, S. , Combs, SE. , Capper, RG. , et al.   (2007)   'The structure and transcriptional analysis of a global regulator from Neisseria meningitidis'. Journal of Biological Chemistry, 282 (19).  pp. 14655 - 14664. doi: 10.1074/jbc.M701082200 

Yates, SF. , Paterson, AM. , Nolan, KF. , Cobbold, SP. , et al.   (2007)   'Induction of regulatory T cells and dominant tolerance by dendritic cells incapable of full activation'. Journal of Immunology, 179 (2).  pp. 967 - 976. 

Tett, A. , Spiers, AJ. , Crossman, LC. , Ager, D. , et al.   (2007)   'Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet'. ISME Journal, 1 (4).  pp. 331 - 340. doi: 10.1038/ismej.2007.47 

Bennett, JS. , Jolley, KA. , Sparling, PF. , Saunders, NJ. , et al.   (2007)   'Species status of Neisseria gonorrhoeae: Evolutionary and epidemiological inferences from multilocus sequence typing'. BMC Biology, 5 doi: 10.1186/1741-7007-5-35 Download publication 

Snyder, LAS. , McGowan, S. , Rogers, M. , Duro, E. , et al.   (2007)   'The repertoire of minimal mobile elements in the Neisseria species and evidence that these are involved in horizontal gene transfer in other bacteria'. Molecular Biology and Evolution, 24 (12).  pp. 2802 - 2815. doi: 10.1093/molbev/msm215 

Morrison, JL. , Breitling, R. , Higham, DJ.  and Gilbert, DR.   (2006)   'A lock-and-key model for protein-protein interactions.'. Bioinformatics, 22 pp. 2012 - 2019. doi: 10.1093/bioinformatics/btl338 

Vinciotti, V. , Tucker, A. , Kellam, P.  and Liu, X.   (2006)   'The robust selection of predictive genes via a simple classifier'. Applied Bioinformatics, 5 (1).  pp. 1 - 11. Download publication 

Gunesekere, IC. , Kahler, CM. , Ryan, CS. , Snyder, LAS. , et al.   (2006)   'Ecf, an alternative sigma factor from Neisseria gonorrhoeae, controls expression of msrAB, which encodes methionine sulfoxide reductase'. Journal of Bacteriology, 188 (10).  pp. 3463 - 3469. doi: 10.1128/JB.188.10.3463-3469.2006 

Snyder, LAS.  and Saunders, N.   (2006)   'The majority of genes in the pathogenic Neisseria species are present in non-pathogenic Neisseria lactamica, including those designated as 'virulence genes''. BMC Genomics, 7 doi: 10.1186/1471-2164-7-128 Download publication 

Nichols, CE. , Sainsbury, S. , Berrow, NS. , Alderton, D. , et al.   (2006)   'Structure of the PII signal transduction protein of Neisseria meningitidis at 1.85 Ȃ resolution'. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 62 (Pt 6).  pp. 494 - 497. doi: 10.1107/S1744309106015430 Download publication 

Gunesekere, IC. , Kahler, CM. , Powell, DR. , Snyder, LAS. , et al.   (2006)   'Comparison of the RpoH-dependent regulon and general stress response in Neisseria gonorrhoeae'. Journal of Bacteriology, 188 (13).  pp. 4769 - 4776. doi: 10.1128/JB.01807-05 

Salaün, L.  and Saunders, NJ.   (2006)   'Population-associated differences between the phase variable LPS biosynthetic genes of Helicobacter pylori'. BMC Microbiology, 6 doi: 10.1186/1471-2180-6-79 Download publication 

Overton, TW. , Whitehead, R. , Li, Y. , Snyder, LAS. , et al.   (2006)   'Coordinated regulation of the Neisseria gonorrhoeae-truncated denitrification pathway by the Nitric Oxide-sensitive repressor, NsrR, and Nitrite-insensitive NarQ-NarP'. Journal of Biological Chemistry, 281 (44).  pp. 33115 - 33126. doi: 10.1074/jbc.M607056200 

Saunders, NJ. , Boonmee, P. , Peden, JF.  and Jarvis, SA.   (2005)   'Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori'. BMC Genomics, 6 doi: 10.1186/1471-2164-6-9 Download publication 

Torrance, GM. , Gilbert, DR. , Michalopoulos, I.  and Westhead, DR.   (2005)   'Protein structure topological comparison, discovery and matching service.'. Bioinformatics, 21 pp. 2537 - 2538. doi: 10.1093/bioinformatics/bti331 

Salaün, L. , Ayraud, S.  and Saunders, NJ.   (2005)   'Phase variation mediated niche adaptation during prolonged experimental murine infection with Helicobacter pylori'. Microbiology, 151 (3).  pp. 917 - 923. doi: 10.1099/mic.0.27379-0 

Letarte, M. , Voulgaraki, D. , Hatherley, D. , Foster-Cuevas, M. , et al.   (2005)   'Analysis of leukocyte membrane protein interactions using protein microarrays'. BMC Biochemistry, 6 doi: 10.1186/1471-2091-6-2 Download publication 

Jordan, PW. , Snyder, LAS.  and Saunders, NJ.   (2005)   'Strain-specific differences in Neisseria gonorrhoeae associated with the phase variable gene repertoire'. BMC Microbiology, 5 doi: 10.1186/1471-2180-5-21 Download publication 

Herbert, MA. , Beveridge, CJE. , McCormick, D. , Aten, E. , et al.   (2005)   'Genetic islands of Streptococcus agalactiae strains NEM316 and 2603VR and their presence in other Group B Streptococcal strains'. BMC Microbiology, 5 doi: 10.1186/1471-2180-5-31 Download publication 

Ren, JS. , Sainsbury, S. , Berrow, NS. , Alderton, D. , et al.   (2005)   'Crystal structure of nitrogen regulatory protein IIA(Ntr) from Neisseria meningitidis'. BMC Structural Biology, 5 doi: 10.1186/1472-6807-5-13 Download publication 

Snyder, LAS. , Davies, JK. , Ryan, CS.  and Saunders, NJ.   (2005)   'Comparative overview of the genomic and genetic differences between the pathogenic Neisseria strains and species'. Plasmid, 54 (3).  pp. 191 - 218. doi: 10.1016/j.plasmid.2005.04.005 

Snyder, LAS. , Jarvis, SA.  and Saunders, NJ.   (2005)   'Complete and variant forms of the ‘gonococcal genetic island’ in Neisseria meningitidis'. Microbiology, 151 (12).  pp. 4005 - 4013. doi: 10.1099/mic.0.27925-0 

Michalopoulos, I. , Torrance, GM. , Gilbert, DR.  and Westhead, DR.   (2004)   'TOPS: An enhanced database of protein structural topology'. Nucleic Acids Research, 32 (DATABASE ISS.).  

Swift, S. , Tucker, A. , Vinciotti, V. , Martin, N. , et al.   (2004)   'Consensus clustering and functional interpretation of gene-expression data'. Genome Biology, 5 (11).  pp. R94 - R94. doi: 10.1186/gb-2004-5-11-r94 Download publication 

Salaün, L. , Linz, B. , Suerbaum, S.  and Saunders, NJ.   (2004)   'The diversity within an expanded and redefined repertoire of phase-variable genes in Helicobacter pylori'. Microbiology, 150 (4).  pp. 817 - 830. doi: 10.1099/mic.0.26993-0 

Snyder, LAS. , Davies, JK.  and Saunders, NJ.   (2004)   'Microarray genomotyping of key experimental strains of Neisseria gonorrhoeae reveals gene complement diversity and five new neisserial genes associated with minimal mobile elements'. BMC Genomics, 5 doi: 10.1186/1471-2164-5-23 Download publication 

Herbert, MA. , Beveridge, CJE.  and Saunders, NJ.   (2004)   'Bacterial virulence factors in neonatal sepsis: Group B streptococcus'. Current Opinion in Infectious Diseases, 17 (3).  pp. 225 - 229. 

Gravenor, MB.  and Saunders, NJ.   (2004)   'Estimation of mutation rates'. Biometrics, 60 (4).  pp. 1053 - 1054. doi: 10.1111/j.0006-341X.2004.261_1.x 

Jordan, P. , Snyder, LAS.  and Saunders, NJ.   (2003)   'Diversity in coding tandem repeats in related Neisseria spp'. BMC Microbiology, 3 doi: 10.1186/1471-2180-3-23 Download publication 

Snyder, LAS. , Shafer, WM.  and Saunders, NJ.   (2003)   'Divergence and transcriptional analysis of the division cell wall (dcw) gene cluster in Neisseria spp.'. Molecular Microbiology, 47 (2).  pp. 431 - 442. doi: 10.1046/j.1365-2958.2003.03204.x 

Salaün, L. , Snyder, LAS.  and Saunders, NJ.   (2003)   'Adaptation by phase variation in pathogenic bacteria'. Advances in Applied Microbiology, 52 pp. 263 - 301. doi: 10.1016/S0065-2164(03)01011-6 

Maloy, KJ. , Salaun, L. , Cahill, R. , Dougan, G. , et al.   (2003)   'CD4+CD25+ TR cells suppress innate immune pathology through cytokine-dependent mechanisms'. Journal of Experimental Medicine, 197 (1).  pp. 111 - 119. doi: 10.1084/jem.20021345 Download publication 

Saunders, NJ. , Richard Moxon, E.  and Gravenor, MB.   (2003)   'Mutation rates: Estimating phase variation rates when fitness differences are present and their impact on population structure'. Microbiology, 149 (2).  pp. 485 - 495. doi: 10.1099/mic.0.25807-0 

Moxon, ER. , Hood, DW. , Saunders, NJ. , Schweda, EKH.  and Richards, JC.   (2002)   'Functional genomics of pathogenic bacteria'. Philosophical Transactions of the Royal Society of London: Biological Sciences, 357 (1417).  pp. 109 - 116. doi: 10.1098/rstb.2001.0986 

Liu, SV. , Saunders, NJ. , Jeffries, A.  and Rest, RF.   (2002)   'Genome analysis and strain comparison of Correia repeats and Correia repeat-enclosed elements in pathogenic Neisseria'. Journal of Bacteriology, 184 (22).  pp. 6163 - 6173. doi: 10.1128/JB.184.22.6163-6173.2002 

Saunders, NJ.  and Snyder, LAS.   (2002)   'The minimal mobile element'. Microbiology, 148 (12).  pp. 3756 - 3760. 

Snyder, LAS. , Saunders, NJ.  and Shafer, WM.   (2001)   'A putatively phase variable gene (dca) required for natural competence in Neisseria gonorrhoeae but not Neisseria meningitidis is located within the division cell wall (dcw) gene cluster'. Journal of Bacteriology, 183 (4).  pp. 1233 - 1241. doi: 10.1128/JB.183.4.1233-1241.2001 

Snyder, LAS. , Butcher, SA.  and Saunders, NJ.   (2001)   'Comparative whole genome analyses reveal over 100 putative phase variable genes in the pathogenic Neisseria spp'. Microbiology, 147 (8).  pp. 2321 - 2332. 

Gilbert, DR. , Schroeder, M.  and Van Helden, J.   (2000)   'Interactive visualization and exploration of relationships between biological objects'. Trends in Biotechnology, 18 (12).  pp. 487 - 494. doi: 10.1016/S0167-7799(00)01510-9 

De Bolle, X. , Bayliss, CD. , Field, D. , Van De Ven, T. , et al.   (2000)   'The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases'. Molecular Microbiology. pp. 211 - 222. doi: 10.1046/j.1365-2958.2000.01701.x 

Pizza, M. , Scarlato, V. , Masignani, V. , Giuliani, MM. , et al.   (2000)   'Identification of vaccine candidates against Serogroup B Meningococcus by whole-genome sequencing'. Science, 287 (5459).  pp. 1816 - 1820. doi: 10.1126/science.287.5459.1816 

Tettelin, H. , Saunders, NJ. , Heidelberg, J. , Jeffries, AC. , et al.   (2000)   'Complete genome sequence of Neisseria meningitidis Serogroup B Strain MC58'. Science, 287 (5459).  pp. 1809 - 1815. doi: 10.1126/science.287.5459.1809 

Saunders, NJ.   (2000)   'Working from the particular to the general: The development of comparative genomics - A meeting report from the 4th Annual Conference on Microbial Genomes'. Molecular Microbiology, 36 (5).  pp. 1034 - 1036. doi: 10.1046/j.1365-2958.2000.01929.x 

Saunders, NJ. , Jeffries, AC. , Hood, DW.  and Richard Moxon, E.   (2000)   'High rates of phase variation in Campylobacter jejuni'. Molecular Microbiology, 36 (6).  pp. 1504 - 1505. doi: 10.1046/j.1365-2958.2000.01947.x 

Saunders, NJ. , Peden, JF.  and Richard Moxon, E.   (2000)   'DNA uptake sequences in Helicobacter pylori - Authors’ reply'. Microbiology, 146 (6).  pp. 1255 - 1256. 

Saunders, NJ.  and Jeffries, AC.   (2000)   'The growing utility of microbial genome sequences (Meeting Report)'. Genome Biology, 1 (1).  doi: 10.1186/gb-2000-1-1-reports410 Download publication 

Saunders, NJ. , Jeffries, AC. , Peden, JF. , Hood, DW. , et al.   (2000)   'Repeat-associated phase variable genes in the complete genome sequence of Neisseria meningitidis strain MC58'. Molecular Microbiology, 37 (1).  pp. 207 - 215. doi: 10.1046/j.1365-2958.2000.02000.x 

Saunders, NJ. , Hood, DW.  and Richard Moxon, E.   (1999)   'Bacterial evolution: Bacteria play pass the gene'. Current Biology, 9 (5).  pp. R180 - R183. doi: 10.1016/S0960-9822(99)80108-0 

Saunders, NJ. , Peden, JF.  and Richard Moxon, E.   (1999)   'Absence in Helicobacter pylori of an uptake sequence for enhancing uptake of homospecific DNA during transformation'. Microbiology, 145 (12).  pp. 3523 - 3528. 

Shackley, F. , Roberts, P. , Heath, P. , Bowler, I.  and Saunders, NJ.   (1998)   'Trough-only monitoring of serum vancomycin concentrations in neonates'. Journal of Antimicrobial Chemotherapy, 41 (1).  pp. 141 - 142. doi: 10.1093/jac/41.1.141 

Saunders, NJ. , Peden, JF. , Hood, DW.  and Richard Moxon, E.   (1998)   'Simple sequence repeats in the Helicobacter pylori genome'. Molecular Microbiology, 27 (6).  pp. 1091 - 1098. doi: 10.1046/j.1365-2958.1998.00768.x 

Hosking, SL. , Deadman, ME. , Richard Moxon, E. , Peden, JF. , et al.   (1998)   'An in silico evaluation of Tn916 as a tool for generalized mutagenesis in Haemophilus influenzae Rd'. Microbiology, 144 (9).  pp. 2525 - 2530. doi: 10.1099/00221287-144-9-2525 

Saunders, NJ.  and Richard Moxon, E.   (1998)   'Implications of sequencing bacterial genomes for pathogenesis and vaccine development'. Current Opinion in Biotechnology, 9 (6).  pp. 618 - 623. doi: 10.1016/S0958-1669(98)80140-7 

Esfahani, RF. , Saunders, N. , Ward, KN.  and Hodgson, HJF.   (1995)   'The spectrum of hepatitis C antibody positive disease in a teaching hospital'. Journal of Infection, 30 (2).  pp. 115 - 119. doi: 10.1016/S0163-4453(95)80005-0 

MacGowan, A. , Lovering, A. , White, L. , Reeves, D. , et al.   (1995)   'Why monitor peak vancomycin concentrations? - Letters to the Editor'. Lancet, 345 (8950).  pp. 645 - 647. doi: 10.1016/S0140-6736(95)90546-4 

Saunders, NJ.  and Cohen, J.   (1995)   'A study of the interaction between recombinant bactericidal permeability increasing protein (rBPI23) and gentamicin'. International Journal of Antimicrobial Agents, 5 (4).  pp. 259 - 263. doi: 10.1016/0924-8579(95)00012-W 

Saunders, NJ.   (1995)   'Vancomycin administration and monitoring reappraisal'. Journal of Antimicrobial Chemotherapy, 36 (2).  pp. 279 - 282. doi: 10.1093/jac/36.2.279 

Saunders, NJ. , Want, SV.  and Adams, DJ.   (1995)   'Assay of vancomycin by fluorescence polarisation immunoassay and EMIT in patients with renal failure'. Journal of Antimicrobial Chemotherapy, 36 (2).  pp. 411 - 415. doi: 10.1093/jac/36.2.411 

Saunders, NJ. , Adams, DJ.  and Lynn, WA.   (1995)   'A prospective laboratory-based audit of gentamicin use and therapeutic monitoring'. Journal of Antimicrobial Chemotherapy, 36 (4).  pp. 729 - 736. doi: 10.1093/jac/36.4.729 

Saunders, NJ.   (1994)   'Why monitor peak vancomycin concentrations?'. Lancet, 344 (8989-8940).  pp. 1748 - 1750. doi: 10.1016/S0140-6736(94)92890-8 

Books

Winter, M.  and Wei, J.   (2013) Mathematical aspects of pattern formation in biological systems.  Springer London, London 

Bridger, JM.  and Volpi, EV.   (2010) Fluorescence in situ hybridization (FISH).  Springer 

Priami, C. , Breitling, R. , Gilbert, D. , Heiner, M.  and Uhrmacher, AM.   (2010) Transactions on computational systems biology XII. Berlin/Heidelberg:  Springer 

Saunders, NJ.   (2009) Flu And You: Your Questions Answered, And What You Need To Know.  Twin Serpents Ltd 

Abraham, A. , Grosan, C.  and Pedrycz, W.   (2008) Engineering Evolutionary Intelligent Systems.  Springer 

Book chapters

Wu, Z. , Grosan, C.  and Gilbert, D.  (2014)   'Empirical Study of Computational Intelligence Strategies for Biochemical Systems Modelling', in Nature Inspired Cooperative Strategies for Optimization (NICSO 2013).  Springer International Publishing pp. 245 - 260. 

Harvey, AJ.  (2012)   'Protein tyrosine kinase-6 (PTK6)', in Encyclopedia of Signaling Molecules.  Springer (1)  

Pârvu, O. , Gilbert, D. , Heiner, M. , Liu, F.  and Saunders, N.  (2013)   'Modelling and Analysis of Phase Variation in Bacterial Colony Growth', in Computational Methods in Systems Biology.  Springer Berlin Heidelberg pp. 78 - 91. 

Bourne, G. , Moir, C. , Bikkul, MU. , Ahmed Hassan, M. , et al.  (2013)   'Interphase chromosome behavior in normal and diseased cells', in Yurov, Y. , Vorsanova, SG.  and Iourov, IY. (eds.) Human Interphase Chromosomes: the Biomedical Aspects.  Springer pp. 9 - 33. 

Gilbert, D. , Heiner, M. , Liu, F.  and Saunders, N.  (2013)   'Colouring space-a coloured framework for spatial modelling in systems biology', in Application and Theory of Petri Nets and Concurrency.  Springer Berlin Heidelberg pp. 230 - 249. 

Harvey, A.  (2013)   'Signalling Cross Talk', in Harvey, AJ. (ed.) Cancer Cell Signalling.  Wiley Blackwell pp. 193 - 206. 

Thorpe, M. , Shehu, E.  and Harvey, A.  (2013)   'Insulin and the insulin like growth factor (IGF) family', in Harvey, AJ. (ed.) Cancer Cell Signalling.  Wiley Blackwell pp. 25 - 43. 

Harvey, A.  (2013)   'Epidermal Growth Factor Receptor Family', in Harvey, AJ. (ed.) Cancer Cell Signalling.  Wiley Blackwell pp. 1 - 24. 

Wu, Z. , Yang, S.  and Gilbert, D.  (2012)   'A hybrid approach to piecewise modelling of biochemical systems', in Parallel Problem Solving from Nature-PPSN XII.  Springer Berlin Heidelberg pp. 519 - 528. 

Pook, M.  (2012)   'DNA methylation and trinucleotide repeat expansion diseases', in Tatarinova, T.  and Kerton, O. (eds.) DNA Methylation - From Genomics to Technology.  on-line InTech pp. 193 - 208. Download publication 

Bridger, JM.  and Mehta, IS.  (2011)   'Nuclear Molecular Motors for Active, Directed Chromatin Movement in Interphase Nuclei', in Niall, A.  and Freemont, P. (eds.) Advances in Nuclear Architecture.  

Ceccon, S. , Garway-Heath, D. , Crabb, D.  and Tucker, A.  (2011)   'Ensembles of Bayesian network classifiers using glaucoma data and expertise', in Okun, O. , Valentini, G.  and Re, M. (eds.) Ensembles in Machine Learning Applications.  Berlin/Heidelberg Springer-Verlag (373) : pp. 133 - 150. 

Harvey, A.  and Burmi, RS.  (2011)   'Future therapeutic strategies: Implications for Brk targeting', in Gunduz, E.  and Gundez, M. (eds.) Breast Cancer - Current and Alternative Therapeutic Modalities.  InTech Download publication 

Lodhi, H.  and Gilbert, D.  (2011)   'Bootstrapping parameter estimation in dynamic systems', in Elomaa, T. , Hollmen, J.  and Mannila, H. (eds.) Discovery Science: Proceedings of the 14th International Conference, DS 2011, Espoo, Finland, October 5-7, 2011.  Springer (6926) : pp. 194 - 208. 

Saunders, NJ.  and Davies, JK.  (2011)   'The use of the pan-Neisseria microarray and experimental design for transcriptomics studies of Neisseria', in Chrisodoulides, M. (ed.) Neisseria Meningitidis: Advanced Methods and Protocols.  Springer (799) : pp. 295 - 317. 

Foster, HA. , Sturmey, R. , Stokes, P. , Leese, HJ. , et al.  (2010)   'Fluorescence in situ hybridization on early porcine embryos', in Bridger, JM.  and Volpi, EV. (eds.) FISH: Methods in Molecular Biology.  Humana Press 

Foster, HA. , Sturmey, RG. , Stokes, PJ. , Leese, HJ. , et al.  (2010)   'Fluorescence in situ hybridization on early porcine embryos', in Bridger, JM.  and Volpi, EV. (eds.) Fluorescence in situ hybridization (FISH).  Springer (659)  

Elcock, LS.  and Bridger, JM.  (2010)   'Fluorescence in situ hybridization on DNA halo preparations and extended chromatin fibers', in Bridger, JM.  and Volpi, EV. (eds.) Fluorescence in situ hybridization (FISH).  Springer (659)  

Garimberti, E.  and Tosi, S.  (2010)   'Fluorescence in situ hybridization (FISH), basic principles, and methodology', in Bridger, JM.  and Volpi, EV. (eds.) Fluorescence in situ hybridization (FISH).  Springer (659)  

Odoemelam, EC. , Raghavan, N. , Ittiprasert, W. , Miller, A. , et al.  (2010)   'FISH on chromosomes derived from the snail model organism biomphalaria glabrata', in Bridger, JM.  and Volpi, EV. (eds.) Fluorescence in situ hybridization (FISH).  Springer (659)  

Panov, P. , Soldatova, L.  and Dzeroski, S.  (2010)   'Representing Entities in the OntoDM Data Mining Ontology', in Džeroski, S. , Goethals, B.  and Panov, P. (eds.) Inductive Databases and Constraint-Based Data Mining.  Springer pp. . 

Breitling, R. , Donaldson, RA. , Gilbert, DR.  and Heiner, M.  (2010)   'Biomodel engineering – from structure to behavior', in Priami, C. , Donaldson, RA. , Gilbert, DR.  and Heiner, M. (eds.) Transactions on Computational Systems Biology XII.  Berlin/Heidelberg Springer (5945/2010) : pp. 1 - 12. 

Mustafee, N. , Taylor, SJE. , Katsaliaki, K.  and Brailsford, S.  (2009)   'Speeding up decision support: investigating the distributed simulation of a healthcare supply chain', in Khoumbati, K. , Dwivedi, YK. , Srivastava, A.  and Lal, B. (eds.) Handbook of Research on Advances in Health Informatics and Electronic HealthcareApplication: Global Adoption and Impact of Information Communication Technologies.  Hershey, US IGI Global pp. 255 - 273. Download publication 

Gilbert, D. , Breitling, R. , Heiner, M.  and Donaldson, R.  (2009)   'An introduction to BioModel Engineering, illustrated for signal transduction pathways', in Corne, DW. , Frisco, P. , Paun, G. , Rozenberg, G.  and Salomaa, A. (eds.) Membrane Computing. (5391/2009) : pp. 13 - 28. Download publication 

Heiner, M. , Lehrack, S. , Gilbert, D.  and Marwan, W.  (2009)   'Extended stochastic petri nets for model-based design of wetlab experiments', in Transactions on Computational Systems Biology XI.  Berlin/Heidelberg Springer (5750/2009) : pp. 138 - 163. 

Abraham, A. , Grosan, C.  and Tigan, S.  (2008)   'Pharmaceutical drug design using dynamic connectionist ensemble networks', in(123) : pp. 221 - 231. 

Heiner, M. , Gilbert, D.  and Donaldson, R.  (2008)   'Petri nets for systems and synthetic biology', in Formal Methods for Computational Systems Biology.  Berlin/Heidelberg Springer (5016/2008) : pp. 215 - 264. Download publication 

Richards, HD. , Makatsoris, C.  and Chang, YS.  (2008)   'Human-centric eBusiness', in Libraries, AOCAR.  and Khosrow-Pour, M. (eds.) Encyclopedia of Information Science and Technology, Second Edition.  IGI Global pp. 1782 - 1788. Download publication 

Abraham, A.  and Grosan, C.  (2008)   'Engineering evolutionary intelligent systems: Methodologies, architectures and reviews', in(82) : pp. 1 - 22. 

Reyes, JA.  and Gilbert, D.  (2008)   'Combining one-class classification models based on diverse biological data for prediction of protein-protein interactions', in Bairoch, A. , Cohen-Boulakia, S.  and Froidevaux, C. (eds.) Data Integration in the Life Sciences. (5109/2008) : pp. 177 - 191. 

Gilbert, D. , Heiner, M. , Rosser, S. , Fulton, R. , et al.  (2008)   'A case study in model-driven synthetic biology', in Hinchey, M. , Pagnoni, A. , Rammig, FJ.  and Schmeck, H. (eds.) Biologically-Inspired Collaborative Computing. (268/2008) : pp. 163 - 175. Download publication 

Donaldson, R.  and Gilbert, D.  (2008)   'A model checking approach to the parameter estimation of biochemical pathways', in Heiner, M.  and Uhrmacher, AM. (eds.) Computational Methods in Systems Biology. (5307/2008) : pp. 269 - 287. Download publication 

Liu, X. , Jiang, J. , Ajayi, O. , Gu, X. , et al.  (2008)   'BioNessieG - a grid enabled biochemical networks simulation environment', in Solomonides, T. , Silverstein, JC. , Saltz, J. , Legré, Y. , et al. (eds.) Studies in Health Technology and Informatics. (138) : pp. 147 - 157. Download publication 

Saunders, N.  (2007)   'Protein microarrays', in Falciani, F. (ed.) Microarray technology through applications.  Abingdon Taylor & Francis pp. 211 - 226. 

Snyder, LAS. , Snudden, G. , Haan, N.  and Saunders, NJ.  (2007)   'Comparative genomics: The nature of GCH analysis and data interpretation', in Falciani, F. (ed.) Microarray technology through applications.  Abingdon Taylor & Francis pp. 269 - 284. 

Snyder, LAS. , Jordan, PW.  and Saunders, NJ.  (2007)   'Neisseria: A post-genomic view', in Pallen, MJ. , Nelson, KE.  and Preston, GM. (eds.) Bacterial pathogenomics.  Washington, DC American Society for Microbiology pp. 90 - 119. 

Saunders, NJ.  and Snyder, LAS.  (2005)   'The neisserial genomes: What they reveal about the diversity and behavior of these species', in Dunn, MJ. , Jorde, LB. , Little, PFR.  and Subramaniam, S. (eds.) Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics.  Wiley 

Saunders, NJ.  (2003)   'Evasion of antibody responses: Bacterial phase variation', in Henderson, B.  and Oyston, PCF. (eds.) Bacterial evasion of host immune responses.  Cambridge Cambridge University Press pp. 103 - 124. 

Saunders, NJ.  and Butcher, S.  (2003)   'The use of complete genome sequences in vaccine design', in Vaccine Protocols.  New Jersey Humana Press (87) : pp. 301 - 312. 

Jeffries, AC. , Saunders, NJ.  and Hood, DW.  (2001)   'Genome sequencing and annotation', in Pollard, AJ.  and Maiden, MCJ. (eds.) Meningococcal disease.  Humana Press Inc pp. 215 - 231. 

Conference papers

Bridger, JM.   (2015)   'The Potential of Human Artificial Chromosomes in Biomedicine-are they the ultimate vector for gene therapy treatments in the clinic?' , 20th International Chromosome Conference (ICC). Univ Kent, Canterbury, ENGLAND. 1 - 4 September. SPRINGER, pp. 352 - 353. Download publication 

Bikkul, MU. , Slijepcevic, P. , Anderson, R. , Faragher, RGA. , et al.   (2015)   'Genome Organisation is affected in immortalised control and Hutchinson-Gilford Progeria Cells' , 20th International Chromosome Conference (ICC). Univ Kent, Canterbury, ENGLAND. 1 - 4 September. SPRINGER, pp. 392 - 393. Download publication 

Murgia, A. , Tonelli, R. , Marchesi, M. , Concas, G. , et al.   (2014)   'System performance analyses through object-oriented fault and coupling prisms' . doi: 10.1145/2568088.2568089 

Li, M. , Yang, S.  and Liu, X.   (2014)   'A test problem for visual investigation of high-dimensional multi-objective search' . doi: 10.1109/CEC.2014.6900306 Download publication 

Anjomani-Virmouni, S. , Al-Mahdawi, S. , Sandi, C. , Yasaei, H. , et al.   (2014)   'Identification of telomere dysfunction in Friedreich ataxia' , EMBO Conference on Telomeres, Telomerase and Disease. Brussels, Belgium. 1 - 4 May. [unpublished].  Download publication 

Trifonova, N. , Duplisea, D. , Kenny, A. , Maxwell, D.  and Tucker, A.   (2014)   'Incorporating Regime Metrics into Latent Variable Dynamic Models to Detect Early-Warning Signals of Functional Changes in Fisheries Ecology' , Discovery Science. Bled. 6 - 6 October. Download publication 

Pavlidis, S. , Swift, S. , Tucker, A.  and Counsell, S.   (2013)   'The modelling of glaucoma progression through the use of cellular automata' . doi: 10.1007/978-3-642-41398-8_28 

Panov, P. , Soldatova, L.  and Džeroski, S.   (2013)   'OntoDM-KDD: Ontology for representing the knowledge discovery process' . doi: 10.1007/978-3-642-40897-7_9 

Young, T. , Towstoless, M. , Zhang, Y. , Liu, X. , et al.   (2013)   'Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface' . 

Bo, V. , Lysenko, A. , Saqi, M. , Habash, D.  and Tucker, A.   (2013)   'Integrating multiple studies of wheat microarray data to identify treatment-specific regulatory networks' . doi: 10.1007/978-3-642-41398-8_10 

Rausanu, S. , Grosan, C. , Wu, Z. , Parvu, O.  and Gilbert, D.   (2013)   'Evolving biochemical systems' . IEEE. 

He, Z. , Ochs, C. , Soldatova, L. , Perl, Y. , et al.   (2013)   'Auditing redundant import in reuse of a top level ontology for the drug discovery investigations ontology' . 

Pook, M. , Al-Mahdawi, S.  and Sandi, C.   (2013)   'Rapid DNA Methylation Analysis of the FXN gene in Friedreich ataxia cells and tissues' , 63rd American Society for Human Genetics Meeting. Boston, USA. 22 - 26 October. [unpublished].  

Taylor, S. , Ghorbani, M. , Mustafee, N. , Kiss, T. , et al.   (2013)   'Investigating the speedup of systems biology simulation using a SZTAKI desktop grid' , ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. [unpublished].  

Skrobanski, S. , Pavlidis, S. , Ismail, W. , Hassan, R. , et al.   (2012)   'Use of general purpose GPU programming to enhance the classification of leukaemia blast cells in blood smear images' . doi: 10.1007/978-3-642-34156-4_34 

Zhang, L. , Kuljis, J.  and Liu, X.   (2012)   'Visualization of high throughput biological data' . doi: 10.2498/iti.2012.0380 

Themis, M. , Garimberti, E. , Estrada, GG. , Arsuaga, J. , et al.   (2012)   'Relative proximity of chromosome territories influences chromosome exchange partners in radiation-induced chromosome rearrangements in primary human bronchial epithelial cells and in a small cell lung cancer cell line' . 

Sandi, C. , Ezzatizadeh, V. , Sandi, M. , Al-Mahdawi, S. , et al.   (2012)   'Genotype and phenotype characterisation of enhanced Friedreich’s ataxia GAA repeat expansion mouse models' , Ataxia Research Conference. London, UK. - 3 November. [unpublished].  Download publication 

Maccagnola, D. , Messina, E. , Gao, Q.  and Gilbert, D.   (2012)   'A machine learning approach for generating temporal logic classifications of complex model behaviours' . Winter Simulation Conference. 

Kugathas, S. , Runnalls, T.  and Sumpter, J.   (2012)   'Synthetic progestins and glucocorticoids affect fish reproduction and physiology' , 48th Congress of the European-Societies-of-Toxicology (EUROTOX). Stockholm, Sweden. 17 - 20 June. [unpublished].  

Aung, MM. , Chang, YS.  and Makatsoris, C.   (2012)   'The Effect of Temperature on Climacteric Fruit in Cold Chain' , International Conference on Advances in Production Management Systems (APMS). Rhodes Island, Greece. 24 - 26 September. [unpublished].  

Pook, M. , Ezzatizadeh, V. , Sandi, C.  and Al-Mahdawi, S.   (2012)   'MLH1 promotes somatic GAA repeat expansions in a Friedreich ataxia mouse model' , 7th International Conference on Unstable Microsatellites and Human Disease. Strasbourg, France. 9 - 14 June. [unpublished].  

Du, X. , Brett, PN. , Assadi, M. , Coulson, C. , et al.   (2011)   'Verification of cochlea behaviour between numerical approach and experiment measurements' . 

Ismail, W. , Hassan, R. , Payne, A.  and Swift, S.   (2011)   'The detection and classification of blast cell in Leukaemia Acute Promyelocytic Leukaemia (AML M3) blood using simulated annealing and neural networks' , AIME 2011: 13th Conference on Artifical Intelligence in Medicine. [unpublished].  Download publication 

Brett, PN. , Du, X. , Assadi, M. , Coulson, C. , et al.   (2011)   'Performance of the smart surgical micro-drill for cochlear implantation' . 

Salazar-Gonzalez, AG. , Li, Y.  and Liu, X.   (2011)   'Optic disc segmentation by incorporating blood vessel compensation' . doi: 10.1109/CIMI.2011.5952040 Download publication 

Kugathas, S. , Runnalle, TJ.  and Sumpter, JP.   (2011)   'Dose-response effects of chronic exposure of fathead minnows to low concentrations of a synthetic glucocorticoid (Poster presentation)' , SETAC-Europe Conference. Milan, Italy. [unpublished].  

Vescan, A. , Groşan, C.  and Yang, S.   (2011)   'A hybrid evolutionary multiobjective approach for the dynamic component selection problem' , Proceedings of the 11th International Conference on Hybrid Intelligent Systems (HIS 2011). [unpublished].  

Winter, M.  and Wei, J.   (2011)   'Cluster solutions in a tritrophic food chain model' , The Croucher Foundation, Advanced Study Institute. Chinese University of Hong Kong. 28 - 5 March. [unpublished].  

Winter, M.  and Wei, J.   (2011)   'Spiky patterns in a tritrophic food chain model' , International Workshop on Modeling and Analysis of PDE Systems of Biological Processes. Capital Normal University, Beijing. 18 - 21 October. [unpublished].  

Tucker, A.  and Duplisea, D.   (2011)   'Integrating marine species biomass data by modelling functional knowledge' , Symposium on Intelligent Data Analysis 2011. Porto, Portugal. 29 - 31 October. Springer. 

Gilbert, D.  and Heiner, M.   (2011)   'How might petri nets enhance your systems biology toolkit' , Applications and Theory of Petri Nets 32nd International Conference (PETRI NETS 2011). Newcastle, UK. 20 - 24 June. Springer, pp. 17 - 37. doi: 10.1007/978-3-642-21834-7_2 

Gao, Q. , Liu, F. , Tree, D.  and Gilbert, D.   (2011)   'Multi-cell modelling using coloured petri nets applied to planar cell polarity' , 2nd International Workshop on Biological Processes & Petri Nets (BioPPN 2011). Newcastle, UK. 20 

Gao, Q. , Liu, F. , Gilbert, D. , Heiner, M.  and Tree, D.   (2011)   'A multiscale approach to modelling planar cell polarity in Drosophila wing using hierarchically coloured petri nets' , 9th International Conference on Computational Methods in Systems Biology (CMSB 2011). Paris, France. 21 - 23 September. ACM, pp. 209 - 218. doi: 10.1145/2037509.2037538 

Kugathas, S.  and Sumpter, JP.   (2010)   'Use of corticosteroid pharmaceuticals in the UK and their In-vitro potencies with fish corticosteroid receptors (Poster presentation)' , SETAC-Europe Conference. Seville, Spain. [unpublished].  

He, Y. , Xiang, Z. , Todd, T. , Courtot, M. , et al.   (2010)   'Ontology representation and ANOVA analysis of vaccine protection investigation' . 

Zoka Assadi, M. , Proops, D. , Reid, A. , Coulson, C.  and Brett, PN.   (2010)   'Mechatronic solutions for measuring disturbance levels within a cochlea' . 

Elliott, MT. , Ma, X.  and Brett, PN.   (2010)   'Discriminating ambulation using a smart sensing plate' . doi: 10.1115/DETC2009-87075 

Zoka Assadi, M. , Du, X. , Brett, PN. , Proops, D. , et al.   (2010)   'Contrasting disturbance levels within a cochlea' . 

Du, X. , Taylor, R. , Brett, PN. , Proops, D. , et al.   (2010)   'A smart surgical robotic for cochlear implantation' . 

Katsaliaki, K. , Mustafee, N.  and Taylor, SJE.   (2010)   'Methodology for profiling literature in healthcare simulation' , The Operational Research Society Simulation Workshop 2010 (SW10). Worcestershire. 23 - 24 March. [unpublished].  Download publication 

Sandi, C. , Pook, M. , Mouro Pinto, R. , Al-Mahdawi, S. , et al.   (2010)   'Prolonged treatment with pimelic o-aminobenzamide HDAC inhibitors ameliorates the disease phenotype of a Friedreich ataxia mouse model' , 4th International Friedreich's ataxia scientific conference. Strasbourg, France. 5 - 7 May. [unpublished].  

Szczerbal, I.  and Bridger, JM.   (2010)   'Association of adipogenic genes with SC-35 domains during porcine adipogenesis' , 19th International Colloquium on animal cytogenetics and gene mapping. Natl Res Inst Anim Prod, Krakow, POLAND. 6 - 9 June. SPRINGER, pp. 738 - 738. 

Pook, MA. , Sandi, C. , Mouro Pinto, R. , Ezzatizadeh, V.  and Al-Mahdawi, S.   (2010)   'Epigenetic changes in Friedreich ataxia pathogenesis and therapy.' , International Symposium on Epigenetics, Chromatin Remodeling and Disease. Valencia, Spain. 1 - 2 July. [unpublished].  

Tucker, A. , Swift, S. , Counsell, S. , Kent, S. , et al.   (2010)   'Data mining the millennium seedbank at Kew' , Workshop on Data Mining in Agriculture (DMA 2010) at the Industrial Conference on Data Mining (ICDM). Berlin/Germany. 14 [unpublished].  

Ceccon, S. , Garway-Heath, D. , Crabb, D.  and Tucker, A.   (2010)   'Investigations of clinical metrics and anatomical expertise with Bayesian network models for classification in early glaucoma' , Workshop on Supervised and Unsupervised Ensemble Methods and Their Applications (SUEMA 2010), held at the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML/PKDD 2010). Barcelona, Spain. 20 [unpublished].  

Li, Y.  and Tucker, A.   (2010)   'Uncovering disease regions using pseudo time-series trajectories on clinical trial data' , 3rd International Conference on BioMedical Engineering and Informatics (BMEI 2010). Yantai, China. 16 - 18 October. [unpublished].  

Pook, M. , Al-Mahdawi, S. , Sandi, C. , Mouro Pinto, R.  and Ezzatizadeh, V.   (2010)   'Epigenetic changes in Friedreich ataxia pathogenesis and therapy' , 24th International Mammalian Genome Conference,. Crete, Greece. 17 - 21 October. [unpublished].  

Hassan, F.  and Tucker, A.   (2010)   'Using cellular automata pedestrian flow statistics with heuristic search to automatically design spatial layout' , 22nd IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2010). Arras, France. 27 - 29 October. [unpublished].  

Jahangirian, M. , Taylor, SJE.  and Young, T.   (2010)   'Economics of modeling and simulation: Reflections and implications for healthcare' , 2010 Winter Simulation Conference. Baltimore, MD. 5 - 8 December. IEEE, pp. 2283 - 2292. 

Salazar-Gonzalez, AG. , Li, Y.  and Liu, X.   (2011)   'Retinal blood vessel segmentation via graph cut' . doi: 10.1109/ICARCV.2010.5707265 Download publication 

Kolch, W. , Birtwistle, M. , Kholodenko, B. , Grindlay, J. , et al.   (2010)   'From benchside to byteside: what we can learn from computational modelling' , 21st Meeting of the European-Association-for-Cancer-Research. Oslo, NORWAY. 26 - 29 June. PERGAMON-ELSEVIER SCIENCE LTD, pp. 3 - 3. 

Wu, Z. , Gao, Q.  and Gilbert, D.   (2010)   'Target driven biochemical network reconstruction based on petri nets and simulated annealing' , 8th Conference on Computational Methods in Systems Biology (CMSB 2010). Trento, Italy. 29 - 1 October. ACM, pp. 33 - 42. doi: 10.1145/1839764.1839770 

Panov, P. , Soldatova, LN.  and Džeroski, S.   (2009)   'Towards an ontology of data mining investigations' . doi: 10.1007/978-3-642-04747-3_21 

Steele, E.  and Tucker, A.   (2009)   'Selecting and weighting data for building consensus gene regulatory networks' . Springer-Verlag, pp. 190 - 201. doi: 10.1007/978-3-642-03915-7_17 

Abraham, A. , Grosan, C.  and Snasel, V.   (2009)   'Programming risk assessment models for online security evaluation Systems' . doi: 10.1109/UKSIM.2009.75 

Abraham, A. , Grosan, C. , Liu, H.  and Chen, Y.   (2009)   'Hierarchical Takagi-Sugeno models for online security evaluation systems' . doi: 10.1109/IAS.2009.348 

Elliott, MT. , Ma, X.  and Brett, PN.   (2009)   'Discriminating ambulation using a smart sensing plate' . doi: 10.1115/DETC2009-87075 

Pant, M. , Thangaraj, R. , Abraham, A.  and Grosan, C.   (2009)   'Differential evolution with laplace mutation perator' . doi: 10.1109/CEC.2009.4983299 

Amir, M. , Khan, F. , Gorle, CB. , Wang, P. , et al.   (2009)   'BiSAn: A software for efficient computation of transcription factor binding motifs for high throughput gene expression analysis' . doi: 10.1109/ICBBE.2009.5162458 

Brett, PN. , Taylor, RP. , Du, X. , Proops, D. , et al.   (2009)   'A smart generic micro-drilling tool applied in cochleostomy' . doi: 10.1007/978-3-642-03906-5-86 

Ruta, A. , Li, Y. , Porkili, S. , Watanabe, S. , et al.   (2009)   'A new approach for in-vehicle camera traffic sign detection and recognition' , IAPR Conference on Machine Vision Applications (MVA 2009). [unpublished].  Download publication 

Al-Mahdawi, S. , Mouro Pinto, R. , Sandi, C. , Ezzatizadeh, V. , et al.   (2009)   'GAA repeat instability and GAA-induced epignetic effects in a mouse model of Friedreich Ataxia' , 6th Unstable Microsatellites and Human Disease Conference. Guanacaste, Costa Rica. 17 - 22 Janruary. [unpublished].  

Garimberti, E. , Bridger, J.  and Tosi, S.   (2009)   'Nuclear positioning of genes and chromosome territories in lymphoma cells with the t(14;18) translocation' , 7th European Cytogenetics Conference. Stockholm, SWEDEN. 4 - 7 July. SPRINGER, pp. 110 - 110. 

Pook, M. , Mouro Pinto, R. , Sandi, C.  and Al-Mahdawi, S.   (2009)   'GAA repeat expansion-based FRDA transgenic mouse models' , Friedreich's Ataxia Research Alliance Therapeutics Symposium. Philadelphia, USA. 16 - 17 July. [unpublished].  

Li, X. , Garway-Heath, D.  and Tucker, A.   (2009)   'Using pseudo time-series trajectories to explore disease regions in glaucoma' , Fourteenth Workshop on Intelligent Data Analysis in bioMedicine and Pharmacology (IDAMAP 2009)P. Verona, Italy. 19 [unpublished].  

Pook, MA. , Mouro Pinto, R. , Sandi, C. , Ezzatizadeh, V.  and Al-Mahdawi, S.   (2009)   'Analysis of GAA instability and epigenetic changes in Friedreich ataxia using a GAA repeat-containing FXN transgenic mouse model' , Euro-Ataxia Conference 2009. Valladolid, Spain. 25 - 26 September. [unpublished].  

Elliott, MT. , Petra, I. , Ma, XH. , Brett, PN.  and Holding, DJ.   (2009)   'Quantifying sway through surface deflection patterns: A novel approach using distributive tactile sensing' . doi: 10.1243/09544119JEIM509 

Bridger, JM. , Odoemelan, EC. , Arican, H. , Mehta, IS. , et al.   (2009)   'SPATIAL REPOSITIONING OF GENE LOCI IN THE INTERPHASE NUCLEI OF BGE CELLS CO-CULTURED WITH SCHISTOSOMA MANSONI PARASITES' , 58th Annual Meeting of the American-Society-of-Tropical-Medicine-and-Hygiene. Washington, DC. 18 - 22 November. AMER SOC TROP MED & HYGIENE, pp. 321 - 321. 

Al Sarakbi, W. , Sasi, W. , Jiang, WG. , Roberts, W. , et al.   (2009)   'Gene transcripts in the tumour suppressor region of chromosome 3 (3p21)' , 32nd Annual San Antonio Breast Cancer Symposium. San Antonio, TX. 9 - 13 December. 

Burmi, R. , Pennington, C. , Edwards, D.  and Harvey, A.   (2009)   'Brk/PTK6 & Bcl-x proteins contribute to reduced sensitivity to chemotherapy' , 32nd Annual San Antonio Breast Cancer Symposium. San Antonio, TX. 9 - 13 December. American Association for Cancer Research, pp. 787S - 788S. doi: 10.1158/0008-5472.SABCS-09-5068 

Pook, MA.  and Al-Mahdawi, S.   (2009)   'Iron chelation therapy for Friedreich ataxia' , First International Conference on Metal Chelation in Biology and Medicine. Bath. 11 - 14 December. [unpublished].  

Wang, J. , Liu, X. , Mustafee, N. , Gao, Q. , et al.   (2009)   'Grid-enabled SIMAP utility: motivation, integration technology and performance results' , UK e-Science All Hands Meeting (AHM 2009). Oxford, UK. 7 - 9 December. [unpublished].  Download publication 

Vescan, A.  and Groşan, C.   (2008)   'Two evolutionary multiobjective approaches for the component selection problem' . doi: 10.1109/ISDA.2008.24 

Yang, F.  and Li, Y.   (2008)   'Set-membership filtering for discrete-time systems with nonlinear equality constraints' , 14th International Conference on Automation and Computing. [unpublished].  

Soldatova, L. , Panov, P.  and Dzeroski, S.   (2008)   'OntoDM: An Ontology of Data Mining' , IEEE International Conference on Data Mining Workshops. [unpublished].  

Ruta, A. , Li, Y.  and Liu, X.   (2008)   'Low-resolution human detection and gait recognition in natural scenes' , 14th International Conference on Automation and Computing. [unpublished].  Download publication 

Pant, M. , Thangaraj, R. , Grosan, C.  and Abraham, A.   (2008)   'Improved particle swarm optimization with low-discrepancy sequences' . doi: 10.1109/CEC.2008.4631204 

Petra, MI. , Holding, DJ.  and Brett, PN.   (2008)   'Implementation of hardwired distributive tactile sensing for innovative flexible digit' . doi: 10.1109/BMEI.2008.316 

Pant, M. , Thangaraj, R. , Grosan, C.  and Abraham, A.   (2008)   'Hybrid differential evolution - particle swarm optimization algorithm for solving global optimization problems' . doi: 10.1109/ICDIM.2008.4746766 

Bhattacharya, A. , Konar, A. , Das, S. , Grosan, C.  and Abraham, A.   (2008)   'Hardware software partitioning problem in embedded system design using particle swarm optimization algorithm' . doi: 10.1109/CISIS.2008.5 

Vescan, A. , Groşan, C.  and Pop, HF.   (2008)   'Evolutionary algorithms for the component selection problem' . doi: 10.1109/DEXA.2008.138 

Grosan, C. , Abraham, A. , Biennier, F.  and Badr, Y.   (2008)   'Enhancing web service selection by user preferences of non-Unctional features' . doi: 10.1109/NWeSP.2008.39 

Ruiz, Y. , Bilbao, J. , Markopoulos, E. , Stoilov, T. , et al.   (2008)   'Electromagnetic fields and radio frequency identification and their effects in our bodies' , 12th WSEAS InternationalConference on SYSTEMS. Heraklion, Greece. - 24 July. [unpublished].  

Paulos, P. , Runnalls, T. , Hala, D. , Nallani, G. , et al.   (2008)   'Effects of norethindrone, a synthetic progestin, on reproductive parameters in fish' , 29th Annual Meeting of SETAC North America. Tampa, Florida. [unpublished].  

Brett, PN.  and Ma, X.   (2008)   'Development of the distributive method towards sensing tactile information in healthcare' . 

Grosan, C. , Abraham, A.  and Helvik, BE.   (2008)   'Building multiobjective resilient networks (invited paper)' . doi: 10.1109/UKSIM.2008.31 

Harris, CA. , Runnalls, TJ. , Hamilton, PB. , Jobling, S. , et al.   (2008)   'Assessing the reproductive ability of intersex roach' , 18th Annual Meeting of SETAC Europe. Warsaw, Poland. [unpublished].  

Pavlidis, S. , Swift, S. , Payne, A.  and Liu, X.   (2008)   'An improved methodology for pathway based microarray analysis based on identification of individual pathways responsible for gene regulation' , The Intelligent Data Analysis in BioMedicine and Pharmacology (IDAMAP). [unpublished].  

Vescan, A.  and Grosan, C.   (2008)   'A hybrid evolutionary multiobjective approach for the component selection problem' . doi: 10.1007/978-3-540-87656-4_21 

Zhao, M. , Abraham, A. , Grosan, C.  and Liu, H.   (2008)   'A fuzzy particle swarm approach to multiobjective quadratic assignment problems' . doi: 10.1109/AMS.2008.169 

Harvey, AJ. , Pennington, CJ. , Edwards, DR. , Eccles, SA.  and Crompton, MR.   (2008)   'Brk expression may affect the differentiation status of breast cancer cells' , Breast Cancer Research Meeting. Royal Society. 13 - 13 May. doi: 10.1186/bcr1960 Download publication 

Szczerbal, I. , Foster, HA.  and Bridger, JM.   (2008)   'Changes in gene position in interphase during porcine adipogenesis are correlated with changes in gene expression' , 18th International Colloquium on Animal Cytogenetics and Gene Mapping (ICACGM). Bucharest, Romania. 8 - 10 June. [unpublished].  

Ruta, A. , Li, YM.  and Liu, XH.   (2008)   'Detection, tracking and recognition of traffic signs from video input' , 11th IEEE International Conference on Intelligent Transportation Systems (ITSC 2008). Beijing, Peoples Republic of China. 30 - 15 October. IEEE, pp. 55 - 60. doi: 10.1109/ITSC.2008.4732535 Download publication 

Abraham, A. , Badr, Y. , Liu, H.  and Grosan, C.   (2008)   'A multi-swarm approach for neighbor selection in peer-to-peer networks' , 5th International Conference on Soft Computing as Transdisciplinary Science and Technology (CSTST '08). Cergy-Pontoise, France. 27 - 31 October. ACM, pp. 178 - 184. 

Al-Sharif, R. , Makatsoris, C.  and Sadik, S.   (2008)   'A Novel Architecture for a Reconfigurable Micro Machining Cell' , The 6th International Conference on Manufacturing Research (ICMR) incorporating the 24th UK National Conference on Manufacturing Research (NCMR). Brunel University, London, UK. 9 - 11 September. Brunel University Press. Download publication 

Brett, PN.   (2008)   'Smart sensing systems for surgical tool-points' . doi: 10.1109/MMVIP.2008.4749525 

Yang, F. , Li, Y.  and Liu, X.   (2008)   'Robust variance constrained filter design for systems with non-gaussian noises' , IEEE International Conference on Networking, Sensing and Control. [unpublished].  doi: 10.1109/ICNSC.2008.4525340 Download publication 

Al-Shahib, A. , Gilbert, D.  and Breitling, R.   (2007)   'Discriminating microbial species using protein sequence properties and machine learning' . 

Park, SH. , Gilbert, D.  and Ryu, KH.   (2007)   'Fast structural similarity search based on topology string matching' , 5th Asia-Pacific Bioinformatics Conference (APBC2007). Hong Kong, Peoples Republic of China. 15 - 17 Janruary. [unpublished].  

Tucker, A. , 't Hoen, PAC. , Vinciotti, V.  and Liu, X.   (2006)   'Temporal Bayesian classifiers for modelling muscular dystrophy expression data' . IOS Press, pp. 441 - 455. Download publication 

Helden, JV. , Gilbert, DR. , Wernisch, L. , Mancuso, R. , et al.   (1999)   'Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database.' . 

Patents

Makatsoris, C. , Paramonov, L.  and Al-Sharif, R.   (2013)  A Modular Flow Reactor.  UK Patent no. WO2013050764.  

Reports

Donaldson, R.  and Gilbert, D.   (2008)  A Monte Carlo Model checker for probabilistic LTL with numerical constraints.  Place of publication: Department of Computer Science at University of Glasgow Download publication 

Posters

Arbenz, L. , Bridger, JM. , Foster, HA. , Van der Heuvel, R. , et al.   (2011)  Stem cell separations and countercurrent chromatography.  [Poster] Exhibited at. 16th International Conference on Biopartitioning and Purification (BPP2011), Puerto Vallarta, Mexico, 18/ 9/ 2011

Page last updated: Tuesday 28 January 2014