Anwar, S., Turienzo, CF., Tsang, L., Smith, SG., Fletcher, H., Toulza, F., Cliff, JM., Brown, M. and Dockrell, HM. et al. (2025) 'Impact of helminth co-infection and treatment on mycobacterial growth inhibition in UK migrants with TB infection'. IJTLD Open, 2 (4). pp. 217 - 223. ISSN: 3005-7590 Open Access Link

Goletti, D., Matteelli, A., Cliff, JM., Meintjes, G., Graham, S., Esmail, H. and Shan Lee, S. et al. (2025) 'World TB Day 2025 Theme “Yes! We Can End TB: Commit, Invest, Deliver” can be made a reality through concerted global efforts to advance diagnosis, treatment and research of tuberculosis infection and disease'. International Journal of Infectious Diseases, 155. pp. 1 - 3. ISSN: 1201-9712 Open Access Link

Smith, SG., Bowness, R. and Cliff, JM. (2025) 'Host-directed therapy in diabetes and tuberculosis comorbidity toward global tuberculosis elimination'. International Journal of Infectious Diseases, 155. pp. 1 - 8. ISSN: 1201-9712 Open Access Link

Eckold, C., van Doorn, CLR., Ruslami, R., Ronacher, K., Riza, A., van Veen, S., Lee, J., Kumar, V., Kerry‐Barnard, S., Malherbe, ST., Kleynhans, L., Stanley, K., Joosten, SA., Critchley, JA., Hill, PC., van Crevel, R., Wijmenga, C., Haks, MC., Ioana, M., Alisjahbana, B., Walzl, G., Ottenhoff, THM., Dockrell, HM., Vianello, E. and Cliff, JM. et al. (2023) 'Impaired resolution of blood transcriptomes through tuberculosis treatment with diabetes comorbidity'. Clinical and Translational Medicine, 13 (9). pp. 1 - 19. ISSN: 2001-1326 Open Access Link

van Doorn, CLR., Eckold, C., Ronacher, K., Ruslami, R., van Veen, S., Lee, J-S., Kumar, V., Kerry-Barnard, S., Malherbe, ST., Kleynhans, L., Stanley, K., Hill, PC., Joosten, SA., van Crevel, R., Wijmenga, C., Critchley, JA., Walzl, G., Alisjahbana, B., Haks, MC., Dockrell, HM., Ottenhoff, THM., Vianello, E., Cliff, JM. and the TANDEM Consortium. et al. (2022) 'Transcriptional profiles predict treatment outcome in patients with tuberculosis and diabetes at diagnosis and at two weeks after initiation of anti-tuberculosis treatment'. eBioMedicine, 82. pp. 1 - 17. ISSN: 2352-3964 Open Access Link

Jacobs, R., Awoniyi, DO., Baumann, R., Stanley, K., McAnda, S., Kaempfer, S., Malherbe, ST., Singh, M., Walzl, G., Chegou, NN., Walzl, G., Chegou, NN., Kriel, M., van der Spuy, G., Loxton, AG., Stanley, K., Malherbe, ST., Kriel, B., Sutherland, JS., Owolabi, O., Sillah, A., Mendy, J., Gindeh, A., Donkor, S., Togun, T., Ota, M., Crampin, AC., Simukonda, F., Amberbir, A., Chilongo, F., Houben, R., Kassa, D., Gebrezgeabher, A., Mesfin, G., Belay, Y., Gebremichael, G., Alemayehu, Y., van der Vyver, M., Amutenya, FN., Nelongo, JN., Monye, L., Sheehama, JA., Iipinge, S., Mayanja-Kizza, H., Namuganga, AR., Muzanye, G., Nsereko, M., Peters, P., Howe, R., Mihret, A., Bekele, Y., Tessema, B., Yamuah, L., Ottenhoff, THM., Geluk, A., Franken, K., van der Ploeg-van Schip, JJ., Corstjens, PLAM., Tjon Kon Fat, EM., de Dood, CJ., Rosenkrands, I., Aagaard, C., Kaufmann, SHE., Esterhuyse, MM., Cliff, JM. and Dockrell, HM. et al. (2022) 'Concurrent evaluation of cytokines improves the accuracy of antibodies against Mycobacterium tuberculosis antigens in the diagnosis of active tuberculosis'. Tuberculosis, 133. pp. 1 - 8. ISSN: 1472-9792 Open Access Link

Lee, J-S., Lacerda, EM., Nacul, L., Kingdon, CC., Norris, J., O'Boyle, S., Roberts, CH., Palla, L., Riley, EM. and Cliff, JM. et al. (2021) 'Salivary DNA Loads for Human Herpesviruses 6 and 7 Are Correlated With Disease Phenotype in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome'. Frontiers in Medicine, 8. pp. 1 - 17. ISSN: 2296-858X Open Access Link

Domingues, TD., Grabowska, AD., Lee, J-S., Ameijeiras-Alonso, J., Westermeier, F., Scheibenbogen, C., Cliff, JM., Nacul, L., Lacerda, EM., Mouriño, H. and Sepúlveda, N. et al. (2021) 'Herpesviruses Serology Distinguishes Different Subgroups of Patients From the United Kingdom Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Biobank'. Frontiers in Medicine, 8. pp. 1 - 11. ISSN: 2296-858X Open Access Link

Yimthin, T., Cliff, JM., Phunpang, R., Ekchariyawat, P., Kaewarpai, T., Lee, J-S., Eckold, C., Andrada, M., Thiansukhon, E., Tanwisaid, K., Chuananont, S., Morakot, C., Sangsa, N., Silakun, W., Chayangsu, S., Buasi, N., Day, N., Lertmemongkolchai, G., Chantratita, W., West, TE. and Chantratita, N. et al. (2020) 'Blood transcriptomics to characterize key biological pathways and identify biomarkers for predicting mortality in melioidosis'. Emerging Microbes and Infections, 10 (1). pp. 8 - 18. ISSN: 2222-1751 Open Access Link

Nacul, L., O'Boyle, S., Palla, L., Nacul, FE., Mudie, K., Kingdon, CC., Cliff, JM., Clark, TG., Dockrell, HM. and Lacerda, EM. et al. (2020) 'How Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) Progresses: The Natural History of ME/CFS'. Frontiers in Neurology, 11. pp. 1 - 13. ISSN: 1664-2295 Open Access Link

Eckold, C., Kumar, V., Weiner, J., Alisjahbana, B., Riza, A-L., Ronacher, K., Coronel, J., Kerry-Barnard, S., Malherbe, ST., Kleynhans, L., Stanley, K., Ruslami, R., Ioana, M., Ugarte-Gil, C., Walzl, G., van Crevel, R., Wijmenga, C., Critchley, JA., Dockrell, HM., Cliff, JM., Dockrell, H., Cliff, J., Eckold, C., Moore, D., Griffiths, U., Laurence, Y., Aarnouste, R., Netea, M., van Crevel, R., Ruesen, C., Lachmandas, E., Kaufmann, S., Beigier, M., Golinski, R., Joosten, S., Ottenhoff, T., Vrieling, F., Haks, M., Walzl, G., Ronacher, K., Malherbe, S., Kleynhans, L., Smith, B., Stanley, K., van der Spuy, G., Loxton, A., Chegou, N., Bosman, M., Thiart, L., Wagman, C., Tshivhula, H., Selamolela, M., Prins, N., du Plessis, W., van Rensburg, I., du Toit, L., Critchley, J., Kerry-Barnard, S., Pearson, F., Grint, D., McAllister, S., Hill, P., Verrall, A., Ioana, M., Riza, A., Cioboata, R., Dudau, M., Nitu, F., Bazavan, I., Olteanu, M., Editoiu, C., Florescu, A., Mota, M., Popa, SG., Firanescu, A., Popa, A., Gheonea, I., Bicuti, S., Lepadat, A., Vladu, I., Clenciu, D., Bicu, M., Streba, C., Demetrian, A., Ciurea, M., Cimpoeru, A., Ciocoiu, A., Dorobantu, S., Plesea, R., Popescu, EL., Cucu, M., Streata, I., Burada, F., Serban-Sosoi, S., Panduru, N., Nicoli, E., Ciontea, M., Capitanescu, I., Olaru, M., Tataru, T., Papurica, M., Valutanu, I., Dubreu, V., Stamatoiu, L., Kumar, V., Wijmenga, C., Ugarte-Gil, C., Coronel, J., Lopez, S., Limascca, R., Villaizan, K., Castro, B., Flores, J., Solano, W., Alisjahbana, B., Ruslami, R., Soetedjo, N., Santoso, P., Chaidir, L., Koesoemadinata, R., Susilawati, N., Annisa, J., Livia, R., Yunivita, V., Soeroto, A., Permana, H., Imaculata, S., Gunawan, Y., Dewi, N., Apriani, L. and TANDEM (Concurrent Tuberculosis and Diabetes Mellitus; unraveling the causal link, and improving care) Consortium. et al. (2020) 'Impact of Intermediate Hyperglycemia and Diabetes on Immune Dysfunction in Tuberculosis'. Clinical Infectious Diseases, 72 (1). pp. 69 - 78. ISSN: 1058-4838 Open Access Link

Ronacher, K., Chegou, NN., Kleynhans, L., Djoba Siawaya, JF., du Plessis, N., Loxton, AG., Maasdorp, E., Tromp, G., Kidd, M., Stanley, K., Kriel, M., Menezes, A., Gutschmidt, A., van der Spuy, GD., Warren, RM., Dietze, R., Okwera, A., Thiel, B., Belisle, JT., Cliff, JM., Boom, WH., Johnson, JL., van Helden, PD., Dockrell, HM. and Walzl, G. et al. (2019) 'Distinct serum biosignatures are associated with different tuberculosis treatment outcomes'. Tuberculosis, 118. pp. 101859 - 101859. ISSN: 1472-9792

Lachmandas, E., Eckold, C., Böhme, J., Koeken, VACM., Marzuki, MB., Blok, B., Arts, RJW., Chen, J., Teng, KWW., Ratter, J., Smolders, EJ., Van Den Heuvel, C., Stienstra, R., Dockrell, HM., Newell, E., Netea, MG., Singhal, A., Cliff, JM. and Van Crevel, R. et al. (2019) 'Metformin Alters Human Host Responses to Mycobacterium tuberculosis in Healthy Subjects'. Journal of Infectious Diseases, 220 (1). pp. 139 - 150. ISSN: 0022-1899

Cliff, JM., King, EC., Lee, J-S., Sepúlveda, N., Wolf, A-S., Kingdon, C., Bowman, E., Dockrell, HM., Nacul, L., Lacerda, E. and Riley, EM. et al. (2019) 'Cellular immune function in myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)'. Frontiers in Immunology, 10 (MAR). pp. 1 - 15. ISSN: 1664-3224 Open Access Link

Nacul, L., De Barros, B., Kingdon, CC., Cliff, JM., Clark, TG., Mudie, K., Dockrell, HM. and Lacerda, EM. et al. (2019) 'Evidence of clinical pathology abnormalities in people with myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) from an analytic cross-sectional study'. Diagnostics, 9 (2). pp. 41 - 41. ISSN: 2075-4418

Chegou, NN., Sutherland, JS., Namuganga, AR., Corstjens, PLAM., Geluk, A., Gebremichael, G., Mendy, J., Malherbe, S., Stanley, K., Van Der Spuy, GD., Kriel, M., Loxton, AG., Kriel, B., Simukonda, F., Bekele, Y., Sheehama, JA., Nelongo, J., Van Der Vyver, M., Gebrexabher, A., Hailu, H., Esterhuyse, MM., Rosenkrands, I., Aagard, C., Kidd, M., Kassa, D., Mihret, A., Howe, R., Cliff, JM., Crampin, AC., Mayanja-Kizza, H., Kaufmann, SHE., Dockrell, HM., Ottenhoff, THM., Walzl, G., McAnda, SP., Owolabi, O., Sillah, A., Gindeh, A., Donkor, S., Togun, T., Ota, M., Muzanye, G., Nsereko, M., Peters, P., Tjon Kon Fat, EM., De Dood, CJ., Franken, K., Van Der Ploeg-Van Schip, JJ., Gebrezgeabher, A., Mesfin, G., Belay, Y., Alemayehu, Y., Amberbir, A., Chilongo, F., Houben, R., Tessema, B., Yamuah, L., Amutenya, FN., Monye, L. and Iipinge, S. et al. (2018) 'Africa-wide evaluation of host biomarkers in QuantiFERON supernatants for the diagnosis of pulmonary tuberculosis'. Scientific Reports, 8 (1). pp. 2675. ISSN: 2045-2322

Gebremicael, G., Kassa, D., Quinten, E., Alemayehu, Y., Gebreegziaxier, A., Belay, Y., Van Baarle, D., Ottenhoff, THM., Cliff, JM. and Haks, MC. et al. (2018) 'Host gene expression kinetics during treatment of tuberculosis in HIV-coinfected individuals is independent of highly active antiretroviral therapy'. Journal of Infectious Diseases, 218 (11). pp. 1833 - 1846. ISSN: 0022-1899

Andreu, N., Phelan, J., De Sessions, PF., Cliff, JM., Clark, TG. and Hibberd, ML. (2017) 'Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis'. Scientific Reports, 7 (1). pp. 42225. ISSN: 2045-2322

Hassan, SS., Akram, M., King, EC., Dockrell, HM. and Cliff, JM. (2015) 'PD-1, PD-L1 and PD-L2 gene expression on t-cells and natural killer cells declines in conjunction with a reduction in PD-1 protein during the intensive phase of tuberculosis treatment'. Plos One, 10 (9). pp. e0137646 - e0137646. ISSN: 1932-6203

Cliff, JM., Cho, JE., Lee, JS., Ronacher, K., King, EC., Van Helden, P., Walzl, G. and Dockrell, HM. et al. (2015) 'Excessive cytolytic responses predict tuberculosis relapse after apparently successful treatment'. Journal of Infectious Diseases, 213 (3). pp. 485 - 495. ISSN: 0022-1899 Open Access Link

Cliff, JM., Kaufmann, SHE., Mcshane, H., van Helden, P. and O'Garra, A. (2015) 'The human immune response to tuberculosis and its treatment: A view from the blood'. Immunological Reviews, 264 (1). pp. 88 - 102. ISSN: 0105-2896

Cliff, JM., Lee, JS., Constantinou, N., Cho, JE., Clark, TG., Ronacher, K., King, EC., Lukey, PT., Duncan, K., Van Helden, PD., Walzl, G. and Dockrell, HM. et al. (2013) 'Distinct phases of blood gene expression pattern through tuberculosis treatment reflect modulation of the humoral immune response'. Journal of Infectious Diseases, 207 (1). pp. 18 - 29. ISSN: 0022-1899

Sebina, I., Cliff, JM., Smith, SG., Nogaro, S., Webb, EL., Riley, EM., Dockrell, HM., Elliott, AM., Hafalla, JCR. and Cose, S. et al. (2012) 'Long-Lived Memory B-Cell Responses following BCG Vaccination'. Plos One, 7 (12). pp. e51381 - e51381. ISSN: 1932-6203

Kirk, SJ., Cliff, JM., Thomas, JA. and Ward, TH. (2010) 'Biogenesis of secretory organelles during B cell differentiation'. Journal of Leukocyte Biology, 87 (2). pp. 245 - 255. ISSN: 0741-5400

Hasan, Z., Cliff, JM., Dockrell, HM., Jamil, B., Irfan, M., Ashraf, M. and Hussain, R. et al. (2009) 'CCL2 responses to Mycobacterium tuberculosis are associated with disease severity in tuberculosis'. Plos One, 4 (12). pp. e8459 - e8459. ISSN: 1932-6203

Cehovin, A., Cliff, JM., Hill, PC., Brookes, RH. and Dockrell, HM. (2007) 'Extended culture enhances sensitivity of a gamma interferon assay for latent Mycobacterium tuberculosis infection'. Clinical and Vaccine Immunology, 14 (6). pp. 796 - 798. ISSN: 1556-6811

Mistry, R., Cliff, JM., Clayfon, CL., Beyers, N., Mohamed, YS., Wilson, PA., Dockrell, HM., Wallace, DM., Van Helden, PD., Duncan, K. and Lukey, PT. et al. (2007) 'Gene-expression patterns in whole blood identify subjects at risk for recurrent tuberculosis'. Journal of Infectious Diseases, 195 (3). pp. 357 - 365. ISSN: 0022-1899

Cliff, JM., Andrade, INJ., Mistry, R., Clayton, CL., Lennon, MG., Lewis, AP., Duncan, K., Lukey, PT. and Dockrell, HM. et al. (2004) 'Differential gene expression identifies novel markers of CD4+ and CD8+ T cell activation following stimulation by Mycobacterium tuberculosis'. Journal of Immunology, 173 (1). pp. 485 - 493. ISSN: 0022-1767