Publications

REFEREED JOURNAL PAPERS

[1] Hirsch M., Swift S. and Liu X., "Optimal Search Space for Clustering Gene Expression Data via Consensus", to appear in: The Journal of Computational Biology, 2008

[2] Wang Z., Yang F., Ho D.W.C., Swift S., Tucker A. and Liu X., "Stochastic Dynamic Modeling of Short Gene Expression Time Series Data", to appear in: IEEE Transactions on NanoBioscience, 2008

[3] Panteris E., Swift S., Payne A. and Liu X., "Mining pathway signatures from microarray data and relevant biological knowledge", to appear in: The Journal of Biomedical Informatics, 2008

[4] Counsell S., Swift S., Tucker A. and Mendes E., "Object-oriented cohesion subjectivity amongst experienced and novice developers: an empirical study", ACM SIGSOFT Software Engineering Notes, 31(5), pp. 1-10, 2006

[5] Counsell S., Crampton J. and Swift S., "The Interpretation and Utility of Three Cohesion Metrics for Object-Oriented Design", ACM Transactions on Software Engineering and Methodology, 15(2), pp. 123-149, 2006

[6] Swift S., Kok J. and Liu X., "Learning Short Multivariate Time Series Models through Evolutionary and Sparse Matrix Computation", Natural Computation, 5(4), pp. 387-426, 2006

[7] Sheng W., Swift S., Zhang L. and Liu X., "A Weighted Sum Validity Function for Clustering With a Hybrid Niching Genetic Algorithm", IEEE Transactions on Systems, Man, and Cybernetics. Part B: Cybernetics, 35(6), 2005

[8] Tucker A., Crampton J. and Swift S., "RGFGA: An Efficient Representation and Crossover for Grouping Genetic Algorithms", Evolutionary Computation, 13(4), pp. 477-99, 2005

[9] Swift S., Tucker A., Liu X., Martin N., Orengo C. and Kellam P., "Consensus Clustering and Functional Interpretation of Gene Expression Data", Genome Biology, 5(11), pp. R94.1 R94.16, 2004

[10] Swift S., Tucker A. and Liu X., "An Analysis of Scalable Methods for Clustering High-Dimensional Gene Expression Data", Annals of Mathematics, Computing and Teleinformatics, 1(2), pp. 80-89, 2004

[11] Swift S. and Liu X., "Predicting Glaucomatous Visual Field Deterioration Through Short Multivariate Time Series Modelling", Artificial Intelligence in Medicine, 24, pp. 5 25, 2002

[12] Kellam P., Liu X., Martin N., Orengo C., Swift S. and Tucker A., "A framework for modelling virus gene expression data", Intelligent Data Analysis, 6(3), pp. 267-279, 2002

[13] Counsell S., Liu X., McFall J., Swift S. and Tucker A., "Evolutionary Algorithms for Grouping High Dimensional Email Data", Intelligent Data Analysis, 6(6), pp. 503-516, 2002

[14] Tucker A., Swift S. and Liu X., "Grouping Multivariate Time Series via Correlation", IEEE Transactions on Systems, Man, and Cybernetics. Part B: Cybernetics, 31(2), pp. 235-245, 2001

[15] Swift S., Tucker A., Martin N. and Liu X., "Grouping Multivariate Time Series Variables: Applications to Chemical Process and Visual Field Data", Knowledge Based Systems, 14, pp. 147-154, 2001

REFEREED CONFERENCE PAPERS

[16] Swift S., Tucker A., Crampton J. and Garway-Heath D., "An Improved Restricted Growth Function Genetic Algorithm for the Consensus Clustering of Retinal Nerve Fibre Data", The Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2007), London, UK, pp. 2174 - 2181, 2007

[17] Tucker A., Swift S. and Crampton J., "Efficiency Updates for the Restricted Growth Function GA for Grouping Problems", The Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2007), London, UK, pp. 1536 - 1536, 2007

[18] Hirsch M., Tucker A., Swift S., Martin N., Orengo C., Kellam P. and Liu X., "Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering", The Proceedings of the second International Symposium on Computational Life Science (COMPLIFE'06), Cambridge, UK, LNBI 4216, Springer, pp. 1-10, 2006

[19] Counsell S., Swift S., Tucker A. and Mendes E., "Object-oriented cohesion as a surrogate of software comprehension: an empirical study", The Proceedings of the IEEE International Workshop on Source Code Analysis and Manipulation (SCAM 2005), Budapest, Hungary, pp. 161- 169, 2005

[20] Panteris E., Swift S., Payne A. and Liu X., "Biochemical Pathway Analysis via Signature Mining", The Proceedings of the First International Symposium on Computational Life Science (COMPLIFE'05), Konstanz, Germany, LNBI 3695, Springer, pp. 12-23, 2005

[21] Swift S., Shi A., Crampton J. and Tucker A., "ICARUS: Intelligent Coupon Allocation for Retailers Using Search", TheProceedings of the 2005 IEEE Congress on Evolutionary Computation (CEC-2005), Edinburgh, UK, pp. 182- 189, 2005

[22] Harman M., Swift S. and Mahdavi K., "An Empirical Study of the Robustness of Two Module Clustering Fitness Functions", The Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2005), Washington DC, USA, pp. 1029 - 1036, 2005

[23] Counsell S., Liu X., Najjar R., Swift S. and Tucker A., "Applying Intelligent Data Analysis to Coupling Relationships in Object-oriented Software", The Proceedings of the Fifth International Conference on Intelligent Data Analysis (IDA-2003), Berlin, Germany, LNCS 2810, Springer-Verlag, pp. 440 450, 2003

[24] Counsell S., Swift S. and Mendes E., "Object-oriented software cohesion: the empirical quagmire", The Proceedings of the IEEE International Workshop on Program Comprehension (IWPC 2002), Paris, France, June, pp. 33-42, 2002

[25] Liu X., Swift S. and Tucker A., "Using Evolutionary Algorithms to Tackle Large Scale Grouping Problems", The Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2001), San-Francisco, USA, Morgan Kaufmann, pp. 454-460, 2001

[26] Kellam P., Liu X., Martin N., Orengo C., Swift S. and Tucker A., "A Framework for Modelling Short, High-Dimensional Multivariate Time Series: Preliminary Results in Virus Gene Expression Data Analysis", The Proceedings of the Fourth International Conference on Intelligent Data Analysis (IDA-2001), Lisbon, Portugal, LNCS 2189, Springer, pp. 218-227, 2001

[27] Counsell S., Liu X., McFall J., Swift S. and Tucker A., "Optimising the Grouping of Email Users to Servers Using Intelligent Data Analysis", The Proceedings of the International Conference on the Engineering of Information Systems (EIS-2001), Lisbon, Portugal, 2001

[28] Counsell S., Swift S. and Tucker A., "An Empirical Investigation into the Interpretation of Faults in Requirements Documents", The Proceedings of Empirical Assessment in Software Engineering (EASE 2001), Keele University, UK, 2001

[29] Tucker A., Swift S., Martin N. and Liu X., "Grouping Multivariate Time Series Variables: Applications to Chemical process and Visual Field Data", The Proceedings of the 20th SGES International Conference on Knowledge Based Systems and Applied Artificial Intelligence (ES-2000), Cambridge, UK, Springer, pp. 171-184, 2000

[30] Liu X., Johnson R., Cheng G., Swift S. and Tucker A., "Soft Computing for Intelligent Data Analysis", The Proceedings of the 18th International Conference of the North American Fuzzy Information Processing Society, New York, USA, IEEE Press, pp. 527-531, 1999

[31] Swift S. and Liu X., "Modelling and Forecasting of Glaucomatous Visual Fields Using Genetic Algorithms", The Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 1999), Orlando, USA, Morgan Kaufmann, pp. 1731-1737, 1999

[32] Swift S., Tucker A. and Liu X., "Evolutionary Computation to Search for Strongly Correlated Variables in High-Dimensional Time-Series", The Proceedings of the Third Internationally Conference on Intelligent Data Analysis (IDA-1999), Amsterdam, The Netherlands, LNCS 1642, Springer-Verlag, pp. 51 62, 1999

REFEREED OTHER PAPERS

[33] Swift S., Tucker A. and Hirsch M., "Improving the Performance of Consensus Clustering Through Seeding: An Application to Visual Field Data", The Proceedings of the Intelligent Data Analysis in Biomedicine and Pharmacology Workshop (IDAMAP2007), Amsterdam, The Netherlands, pp. 29-34, 2007

[34] Panteris E., Swift S., Payne A. and Liu X., "Signature Mining: a Heuristic Approach to Biochemical Pathway Analysis", The Proceedings of the Intelligent Data Analysis in Biomedicine and Pharmacology Workshop (IDAMAP2005), Aberdeen, UK, pp. 5-10, 2005

[35] Counsell S., Liu X., McFall J., Swift S. and Tucker A., "Using Evolutionary Algorithms to Tackle Large-Scale Grouping Problems: an Application to Email Log File Data", The Proceedings of Genetic and Evolutionary Computation Conference (GECCO-2001), Late Breaking Papers, San Francisco, USA, pp. 42-49, 2001

[36] Kellam P., Liu X., Martin N., Orengo C., Swift S. and Tucker A., "Comparing, Contrasting and Combining Clusters in Viral Gene Expression Data", The Proceedings of the Intelligent Data Analysis in Medicine and Pharmacology Workshop (IDAMAP-2001), London, UK, pp. 56-62, 2001

[37] Liu X., Swift S., Tucker A., Cheng G. and Loizou G., "Modelling Multivariate Time Series", The Proceedings of the Intelligent Data Analysis in Medicine and Pharmacology Workshop (IDAMAP 1999), Washington DC, USA, pp. 67-78, 1999